Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0490 ATGGCTTTGCCTAATCAGCAGACTGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAATATGAACCAACCATTGGTGTGGAAGTTCATCCGCTGGATTTCTTCACAAACTGTGGTAAGATTAGATTCTATTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTACATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCCGGGTTTGTGAAAATATCCCCATTGTGCTTTGTGGTAACAAGGTTGATGTCAAGAACAGGCAGGTGAAGGCAAAGCAGGTTACTTTCCACCGGAAGAAGAATTTGCAGTATTATGAGATATCAGCTAAGAGCAATTATAATTTTGAGAAGCCTTTTCTCTACCTCGCCAGGAAACTTGCTGGGGATCCTAATTTGCATTTTGTCGAGTCTCCTGCTCTAGCTCCTCCGGAAGTTCACATCGACTTGGCTGCACAGCAACAGCATGAGGCTGAACTTGCTGCAGCTGCTAGTCAACCCCTTCCAGATGACGATGATGATGCGTTTGAATAG 666 0.4414 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0490 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 PANTHER RAN GTPASE 1 219 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 SMART ran_sub_2 19 220 - -
Vvi4g0490 221 ProSiteProfiles small GTPase Rab1 family profile. 8 221 - -
Vvi4g0490 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Vvi4g0490 221 Gene3D - 4 219 IPR027417 -
Vvi4g0490 221 FunFam GTP-binding nuclear protein 5 219 - -
Vvi4g0490 221 CDD Ran 14 179 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Vvi4g0490 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 194 IPR027417 -
Vvi4g0490 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g0490 221 MobiDBLite consensus disorder prediction 200 221 - -
Vvi4g0490 221 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924|GO:0005525
Vvi4g0490 221 SMART rab_sub_5 14 174 - -
Vvi4g0490 221 NCBIfam small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Vvi4g0490 221 SMART ras_sub_4 11 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0490 Vvi-Chr4 4517445 4521219 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0490 K07936 - nnu:104597687 455.677