Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0485 ATGGGTACTGCTTGTGCTCAGTACCCGTTTGAAGTGACTGCCCATTTCCAAGAAAAATGTAGGGTTTTACATCCGAAAACGAAGTTCTCAAGCTTTAATTTTCCTCCCAAATTGGATTCTTCGAGAATGAACTTATACCCATGTTCATCTTCCACCACCTCCTCCAAGAGGTATGTTGGTCAAATATGTTCTCTACCTGAGTTTGGTGATTTCTTCTGGGACAGAATCCCAACCCCCATGCTTGACATGGTCGAAAGCCCTATGTGCTTGAAGAATTTGACTCCTAAGGAGCTGAAACAATTAGCTGATGAAATCCGTGTAGAGTTGTTTTGTATAATGTCAAAAATGCAAAAACCTTTTAAAGCCAGTCTGGCAGTGGTGGAGCTGACTGTTGCAATTCACTACATTTTCCATGCTCCAATGGACAAGATACTTTGGGATGTGGGGGAAGTGACATATGCACATAAAATTCTCACTGGAAGGCGGGCCCTTATGCATACACTGAGAGAAAGGGGTGGTCTTTCAGGTTTTACATCTCGTTCTGAGAGTGAATATGACCCATTTGGTGCAGGGCATGGATGCAGCAGTATTTCTGCTGGGCTTGGCATGGCGGTTGCTCGAGATTTGAAAGGGAAACGGGAACGTATAGTTACGGTGATTGGCAATGGAACAACTATGGCTGGTCAGGTTTATGAGGCAATGGGCAATGCAGGTTATTTGGACACAAATATGGTAGTAATATTAAATGACAGTCGTCATTCTTTACACCCAAAGCTCGAGGATGGTCAGGCTACACCAATTAACGCTTTATCTAGTACTCTAACCAAGCTCCAGTCAAGTAAATCCTTCCGAAAATTTAGAGAAGCTGCTAAGGGTGTTACCAAGAGAATTGGTAAGGGCATGCATGAGCTGGCTGCTAAAGTAGATGAGTATGCCCGTGGTATGGTGGGTCCACTGGGAGCAACACTCTTTGAAGAGCTTGGTCTATATTATATTGGCCCTGTTGATGGACACAACATTGAAGATCTCATTTCTGTTTTACAAGGGGTGGCATCTTTGGATCCAACTGGTCCTGTGTTGGTTCATGTAATAACAAAGGAATACCAGGGAGTAGAAGCTAGCCAAAAGAGTATGATTTCAAATGGACATCTGAAAGGTTTCTACACCTCCGAATTATCACCATATCCTCTCCCGAGAATGTATAGTGATTGCTTTGTGGAGGCTTTGGTTAATGAGGCAGAAAAGGACAAAGACATTGTGGTGGTTCATGCAGGAATGGGAATGGAACCACCACTTCAACTATTTCAGGAAAAATTTCCTTATAAATTTTTTGATGTGGGAATGGCGGAGCAACATGCAGTTACATTTTCTGCTGGTTTGGCTTGTGGGGGATTGAAACCATTTTGCATAATCCCATCTACCTTCCTACAGAGAGCTTATGATCAGGTAGTTCATGATGTGGATCGGCAGAGAATTCCTGTTCGTTTTGCCATTACAAGTGCAGGACTGGTAGGGTCTGATGGTCCCACACGCTGTGGAGCTTTTGACATAACATTCATGTCCTGTTTACCTAACATGATTGTCATGGCACCATCTGATGAAAATGAGCTCATGCACATGGTGGCCACTGCAGCTCATGTTGATGATAGACCAATTTGCTTCCGATATCCTAGGGGCGCCACTGCTGGAATGAGTAACTCTATATGGAATGGAATTCCCATTGAGATTGGAAAAGGTAAAGTCCTCATAGAGGGTAAAGATGTTGCTCTGCTTGGGTACGGAGTTATGGTTCAGAATTGCCTTAAGGCTTGGTCGCTCCTTTCAGAGCTTGGAATTAGAGTAACTGTTGCTGATGCGAGATTTTGCAAGCCTCTTGACATCCAGCTTGTTAGAGAGCTCTGTGAAAACCATGCCTTCTTAATTACTGTTGAGGAAGGCTCTGTTGGAGGGTTTGGATCCCATGTTGCACAATTCATTGCTCTTGATGGAAAGCTGGATGGAAGAATAAAGTGGCGACCCATCGCTCTACCCGACAACTACATAGAACAGGCATCACCAGAGGAGCAGCTGGCTATTGCAGGGCTCACCGGCCATCACATTGCTGCAACAGTACTAAGTCTGCTCGGCCGTAACCGTGAAGCTCTCCTGTTAATGCAGTAG 2160 0.444 MGTACAQYPFEVTAHFQEKCRVLHPKTKFSSFNFPPKLDSSRMNLYPCSSSTTSSKRYVGQICSLPEFGDFFWDRIPTPMLDMVESPMCLKNLTPKELKQLADEIRVELFCIMSKMQKPFKASLAVVELTVAIHYIFHAPMDKILWDVGEVTYAHKILTGRRALMHTLRERGGLSGFTSRSESEYDPFGAGHGCSSISAGLGMAVARDLKGKRERIVTVIGNGTTMAGQVYEAMGNAGYLDTNMVVILNDSRHSLHPKLEDGQATPINALSSTLTKLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDEYARGMVGPLGATLFEELGLYYIGPVDGHNIEDLISVLQGVASLDPTGPVLVHVITKEYQGVEASQKSMISNGHLKGFYTSELSPYPLPRMYSDCFVEALVNEAEKDKDIVVVHAGMGMEPPLQLFQEKFPYKFFDVGMAEQHAVTFSAGLACGGLKPFCIIPSTFLQRAYDQVVHDVDRQRIPVRFAITSAGLVGSDGPTRCGAFDITFMSCLPNMIVMAPSDENELMHMVATAAHVDDRPICFRYPRGATAGMSNSIWNGIPIEIGKGKVLIEGKDVALLGYGVMVQNCLKAWSLLSELGIRVTVADARFCKPLDIQLVRELCENHAFLITVEEGSVGGFGSHVAQFIALDGKLDGRIKWRPIALPDNYIEQASPEEQLAIAGLTGHHIAATVLSLLGRNREALLLMQ* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0485 719 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 50 717 IPR005477 GO:0008661|GO:0016114
Vvi4g0485 719 CDD TPP_PYR_DXS_TK_like 405 558 - -
Vvi4g0485 719 SUPERFAMILY TK C-terminal domain-like 572 708 IPR009014 GO:0003824
Vvi4g0485 719 SMART Transket_pyr_3 399 564 IPR005475 -
Vvi4g0485 719 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 83 708 IPR005477 GO:0008661|GO:0016114
Vvi4g0485 719 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 81 365 IPR005477 GO:0008661|GO:0016114
Vvi4g0485 719 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 398 566 - -
Vvi4g0485 719 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 80 709 IPR005477 GO:0008661|GO:0016114
Vvi4g0485 719 Gene3D - 399 570 - -
Vvi4g0485 719 Gene3D - 73 374 - -
Vvi4g0485 719 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 577 709 - -
Vvi4g0485 719 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 401 587 IPR029061 -
Vvi4g0485 719 Pfam Transketolase, C-terminal domain 577 700 IPR033248 -
Vvi4g0485 719 Pfam Transketolase, pyrimidine binding domain 401 560 IPR005475 -
Vvi4g0485 719 CDD TPP_DXS 120 366 IPR005477 GO:0008661|GO:0016114
Vvi4g0485 719 Gene3D - 577 709 IPR009014 GO:0003824
Vvi4g0485 719 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 461 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0485 Vvi-Chr4 4457279 4468718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0485 442 659 Acyl Lipid Metabolism Gene Families AT3G13450 24.464 2.99e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0485 K01662 - vvi:100252520 1446.03