Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0484 ATGAAAGCGCTCTTCTTGCTCCCGAAGCATCGCTTTCTTCTCTCTCTCACTTCCCTCTTCCACACCAACCCTAACCCTAACCTTAATTTTCAAAGACCACCATTTCACAAGCTCATCAATAGGCCTCCATCATATCGCCATTGGGACCTGCCAATCCCCACTCTCAAGCAATCCCTAAACCCTAACCCTAACCCTAATTTTTCTCAGTCTGACTTCTCCACCATTTGCGCTCTTCTCACTGACCCCGCTCTCTCTTCCGGTGCGCCTCTCGAAGATGCTTTGAACCGGACAGGAATTAAGCCTTGTTCGGGTCTGTTGCAAGCCATTTTCAGCCATTTTGATGCATCTCCCAAGCCTTTGTTCACTCTCTTTCGCTGGGCTATGAAGCAGCCTGGGTTTGAATCCTCTATGACTCTCTTCAACTCCATGATCGATGTGCTTGCGAAATCGCGGGCTTTCGATTCCGCGTGGTTACTGGTGCTTGATCGTATAGAGGGTGGAGAGGAACCTGAATTGGTTTCGAGCAATACATTTGCAGTACTGATAAGGCGGTATGCTCGCGCAGGTATGACCTTATCTGCCATTCGGACATTTGAATTTGCATTTAGTTTAGATTCGATTAGGGACCGAGATTCAGAATGGAGTTTGTTTAAGATTCTATTGGATTCTCTCTGTAAGGAAGGGCATGTTAGAGTAGCTTCTGAATATTTTGATCAACAAAGAGGACTGGACCCGAGTTGGGTTCCTTCAATTCGAGTATATAATGTATTATTGAATGGTTGGTTTCGATCAAGGAAGCTCAAGCGTGCAGAGCAGCTTTGGAGAACGATGAAGAGGGAAAATGTGAAACCGACTGTTGTAACATACGGTACCCTTGTTGAAGGGTATTGCCGGATGCGACGTTCTGAGAAGGCAATTGAATTAGTGGGTGAGATGAGGGGGAAAGGAATTGAGCCAAATGTAATTGTATATAATCCAATAATTGATTCATTAGCAGAAGCAGGGAGGTTTAAGGAGGCGATGGGGATGATGGAACGATGTTTGGTTTCAGAGACAGGTCCCACTATTTCAACATACAATTCTTTAGTGAAGGGTTTTTGCAAGGCAGGAGATCTAGTAGGTGCGAGTAAGGTACTCAAGATGATGATTAGTAGGGGTTTTGACCCAACTCTGACAACTTATAATTACTTTTTTCGGTACTTCTCAAGATGTGGGAAAACTGAAGAGGGGATGAACCTTTATACCAAGATGATTGAATCTGGACATACCCCAGATCGGCTCACTTACCATCTGTTGATTAAGATGATGTGTGAGGAGGAAAGATTGGACTTGGCAGTGCAAGTTAGCAAGGAAATGAGAGCTAGGGGATGCGATTTGGACTTGGCTACAAGCACCATGCTGGTCCATTTACTGTGCAAAATGCATAGACTGGAAGAGGCTTTTGCAGAGTTTGAAGACATGATTCGAAGAGGAATTGTTCCTCAGTACCTTACTTTTGAGAGAATGAATAATGCACTAAGAAAACGAGGATTGACTGAAATGGCACGGAAATTATGTGATATGATGGCATCTGTCCCTCATTCATCAAAGTTACCAAATACATATTCTGGAGATGGAGATGCATCACGGGCAAGGAAAACAAGTATAATACAGAGGGCCGAAGCAATGTCTGATATTTTGAAGACTTGTAATGATCCGAGAGAACTTGTTAAACGTAGAAGTTCATTTGAAAATACTGTATTGGTTGCAGACCAGTTGATAGAGGATATCAAGAGAAGAGCTAACAAGACATGA 1794 0.4348 MKALFLLPKHRFLLSLTSLFHTNPNPNLNFQRPPFHKLINRPPSYRHWDLPIPTLKQSLNPNPNPNFSQSDFSTICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDASRARKTSIIQRAEAMSDILKTCNDPRELVKRRSSFENTVLVADQLIEDIKRRANKT* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 358 390 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 393 425 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 465 494 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 253 286 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Vvi4g0484 597 NCBIfam pentatricopeptide repeat 428 460 IPR002885 -
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat 315 345 IPR002885 -
Vvi4g0484 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 215 522 - -
Vvi4g0484 597 Gene3D Tetratricopeptide repeat domain 352 563 IPR011990 GO:0005515
Vvi4g0484 597 Gene3D Tetratricopeptide repeat domain 206 348 IPR011990 GO:0005515
Vvi4g0484 597 Gene3D Tetratricopeptide repeat domain 115 205 IPR011990 GO:0005515
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi4g0484 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat 464 492 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat 428 457 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat 217 238 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat family 354 399 IPR002885 -
Vvi4g0484 597 Pfam PPR repeat family 249 298 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0484 158 546 Glycosyltransferase AT1G05670 27.273 2.17e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0484 - - vvi:100257656 1200.65