Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0482 ATGGCTTCTACTCTTTCCCAAGTCTTTAGGGACAACCCTCTCCCCCTCAACCATATCATCCCCCTGGACTTCACCTCCGTTCATTCTCTACCTGAATCTCACGTGTGGCCTGCTTTTGATGGTTTCCCATTTGGGACCACTTACCCTGGCGAAAAGTTCTCCATACCCATCATCGACCTTATGGACCCCAATGCTGCTCAGCTTGTTGGCCATGCATGTGAGAAATGGGGAGCCTTTCAACTTACTAGCCATGGCCTCCCATCTATACTTACCGATGATGTTGAGTCTCAGACTCGACGGCTCTTCGCTCTCCCTGCTCATGAGAAGATGAAGGCCTTACGCCTCCCCAGTGGAGGCACCGGCTACGGCCAAGCTCGGATATCACCGTTCTATCCCAAGTTCATGTGGCATGAAGGCTTCACGATCATGGGGTCTGCAGTTGATCATGCTAGAAAGCTTTGGCCTGATGACTACAAAGGGTTTTGCGATGTCATGGAAGATTATCAGAAGAAGATGAAGGAACTTGCAGAGAGTCTCTTACATATATTTCTAGAATCATTGGACATCTCCAAGGAAGAGTACCGGTCGACTACAATTCAGCGTGGCCGCGAGGCCTGCAATACTGCACTGCAGCTGAATTCATATCCTCCATGCCCGGACCCTAACCGAGCCATGGGGCTAGCCCCACATACAGACTCATTGCTATTCACTATCGTCCACCAAAGCCACACAAGCGGCCTCCAAATCTTGAGAGATGGAGTTGGGTGGATAACAGTGTTTCCTCTTGAAGGTGCACTTGTAGTCAATGTTGGAGATCTCCTCCATATTCTCTCTAATGGTCGGTACCCCAGTGTTCTTCACCGCGCAGTGGTGAACCAGGCGGAGCATCGGATATCCCTCGCATACTTCTATGGCCCTCCAGCTGATTCCCTGATTTCACCTCTCTGTAATCTTGTGAGTTCCGGCCAGCAAGTAGTGGCTCCTCGTTATAGATCAGTGTCTGTTAAGGAGTACGTTGATTTAAAGGAAAAGCACAAGGAGAAGGCACTCTCTTTGTTAAGATTATGA 1068 0.4953 MASTLSQVFRDNPLPLNHIIPLDFTSVHSLPESHVWPAFDGFPFGTTYPGEKFSIPIIDLMDPNAAQLVGHACEKWGAFQLTSHGLPSILTDDVESQTRRLFALPAHEKMKALRLPSGGTGYGQARISPFYPKFMWHEGFTIMGSAVDHARKLWPDDYKGFCDVMEDYQKKMKELAESLLHIFLESLDISKEEYRSTTIQRGREACNTALQLNSYPPCPDPNRAMGLAPHTDSLLFTIVHQSHTSGLQILRDGVGWITVFPLEGALVVNVGDLLHILSNGRYPSVLHRAVVNQAEHRISLAYFYGPPADSLISPLCNLVSSGQQVVAPRYRSVSVKEYVDLKEKHKEKALSLLRL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0482 355 Pfam 2OG-Fe(II) oxygenase superfamily 210 306 IPR044861 -
Vvi4g0482 355 Gene3D - 18 341 IPR027443 -
Vvi4g0482 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 306 IPR005123 -
Vvi4g0482 355 SUPERFAMILY Clavaminate synthase-like 18 345 - -
Vvi4g0482 355 FunFam Gibberellin 3-beta-dioxygenase 1 18 341 - -
Vvi4g0482 355 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 55 342 - -
Vvi4g0482 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 156 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0482 Vvi-Chr4 4431520 4432859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0482 53 338 Glycosyltransferase AT5G59530 28.146 1.99e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0482 K04124 - vvi:100267924 729.554