Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0479 ATGGGACAGAGAAAGGTGGTGGGCCAGATGGCAGTGTTCGAGGTGTGGGAGGGTGATGAGTTGGGCCTAGGTTTGGATTTAGACTATGAAGCCTCCGGACTGTGCCTCTTGGTCTGTGGGCAAAGAAGGTGCCGGCCGATGGAACCACGTGCGTCGAGGGGATGGCAGCAAGCCGATCGGGGATCACCGACTTCGCTGATGCATCCAGAGTTTACATTTACGGAAGTCAGCTCCGTTCAAGCGAGCACAAGTAAAGTTATCTGTTGCCAATTCTCATCAGATGGAAAACTGCTTGCTAGTGGCGGCCATGATAAAAAGGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTCTTGCAACATCTTCATTGGACAAAACCGTCAGGGTTTGGGATGCTGACAGTACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATACAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGGTTATTAAGAACGCTTGCTGTGCAAGGGTATTCAAGGGTGGTATAGTCCAAATTAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCAATACTGGATGTGGAGACACAAGCTTGTCGGCATTCATTACAGGGACATACGGAACCAATTCATTCTGTCTGCTGGGATCCTTCTGGTGAGTTCTTGGCATCAGTAAGTGTGGATTCTATCAGAGTTTGGACGCTTGGGTCAGGAAACGAAGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCTCATGATGGACTAATAGCTGCCTTGGCTGTATCAACTGTGTCTGGCTTGGTTGCTTCAGCTAGCCATGACAAGATTGTCAAGCTCTGGAAGTGA 1092 0.4707 MGQRKVVGQMAVFEVWEGDELGLGLDLDYEASGLCLLVCGQRRCRPMEPRASRGWQQADRGSPTSLMHPEFTFTEVSSVQASTSKVICCQFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMLRLATSSLDKTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNTDDLICSCDGDGEIRYWVIKNACCARVFKGGIVQIRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTEPIHSVCWDPSGEFLASVSVDSIRVWTLGSGNEGECVHELSCNDKKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0479 363 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Vvi4g0479 363 PRINTS G protein beta WD-40 repeat signature 98 112 IPR020472 -
Vvi4g0479 363 PRINTS G protein beta WD-40 repeat signature 350 363 IPR020472 -
Vvi4g0479 363 Gene3D - 204 363 IPR015943 GO:0005515
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 156 - -
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 272 IPR001680 GO:0005515
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 363 IPR001680 GO:0005515
Vvi4g0479 363 Pfam WD domain, G-beta repeat 241 272 IPR001680 GO:0005515
Vvi4g0479 363 Pfam WD domain, G-beta repeat 118 153 IPR001680 GO:0005515
Vvi4g0479 363 Pfam WD domain, G-beta repeat 84 110 IPR001680 GO:0005515
Vvi4g0479 363 Pfam WD domain, G-beta repeat 326 363 IPR001680 GO:0005515
Vvi4g0479 363 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 162 IPR001680 GO:0005515
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 196 - -
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 196 IPR001680 GO:0005515
Vvi4g0479 363 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 79 120 IPR001680 GO:0005515
Vvi4g0479 363 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 62 363 IPR044716 GO:0003714
Vvi4g0479 363 FunFam Transcriptional corepressor LEUNIG 207 363 - -
Vvi4g0479 363 SUPERFAMILY WD40 repeat-like 71 363 IPR036322 GO:0005515
Vvi4g0479 363 CDD WD40 75 363 - -
Vvi4g0479 363 Gene3D - 41 203 IPR015943 GO:0005515
Vvi4g0479 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 363 - -
Vvi4g0479 363 SMART WD40_4 114 153 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 324 363 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 239 277 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 200 236 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 157 197 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 72 111 IPR001680 GO:0005515
Vvi4g0479 363 SMART WD40_4 283 322 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0479 Vvi-Chr4 4396330 4409328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0479 158 362 Miscellaneous Gene Families AT5G08390 25.714 2.38e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0479 - - vvi:100245608 721.465