Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0472 ATGGAGGGAGAGACTATCAAGATTATGAACCAAGACCTTGTGAGGTTGGATCGTTTTGATGGTTCCAACTTCACTAGGTGGCAAGACAAGGTGAGATTCCTTCTCACAGCACTCAAGATTTTCTACATCCTTGATCCTACCTTGGCACCATTACCAGAACCAAAGGAAAATGACACACCTCAAGTGGTGGCGGCAAGGAAGAAGAGGGAGGAGGATGAGCTCATATGTAGGGGTCATATTTTGAACGCCTTATCTGATAGGCTATATGATCTCTACACCAACACCAATTCCGCGAGGGAGATTTGGGAGGCTCTTGAAAACAAGTACAAAGCCGAGGAAGAAGGTACCAAAAAGTTTCTTATTTCTCAATACATAGATTTCAAATTTTTTGATGAAAAGCCTCTCTTACCACAAATTCATGAGTTGCAAGTAATTGTGAATAAGTTGAAAGTTCTCAAAATTGAACTTCCGGAGGCCTTCCAAGTTGGTGCTATTGTGGCTAAATTACCATCAAGTTGGAAAGGTTACCGGAAGAGGATTCTCCACAAGAGTGAAGATTACTCCTTGGAAGAGATTCAAAAACATCTTCGCATTAAGGAAGAATCGAGATCAAGAGACAAAATGGTGGAAGAGTCCAATGGTGGGACTAACAAAGCCAATGCGATTTCAAAGGCCAATCATACTAGAGGTAAAAATAACAACAACAAAAAGAATTCCGGAAATTATATGAGCCCCAAGAAAAATCAAGAGCAATTTAAGGGCAAGAAAGGTCCTTGTTTTGTATGTGGAAAACCCGGGCATTATGCTAGGGAGTGTAGGTTCCGAAAGGACCAAAAAGGGGTTGTGGTGAATGCAATTGATGAGGAGATCATTGCAACACTAAGCGATGTGTGCGTTGTCCAAGGAAAGGTGCAAGGATGGTGGTATGATACTTGTGCCACAGTTCATGTTACCTATGACAAATCTCTTTTCAAGACCTTTGAAGATGCAAAGGGAGATCAAGAGGTTCAAATGGGCAATGAAGGAAAATCCAAGGTGCTTGGCAAGGGCACTATTGAAGTTGTTTTTACCTCCGGCAAAAAGGTTACCCTTAAAAATGTATTATATGTCCCCGATATGAAAAAAAATTTGGTTAGTGGGGATTTGCTTGGCAAACCGGGTATCAAAGCGGTGTTTGAATCCGGTAAGCTAATTTTAACCAAATCGGGGAACTTTGTGGGAAAGGGGTATTCTTGTGATGGGATGATCAAACTTAGTACCAATGACAATATCAATAAAATGACGTCTACTTCCGCTTATATGTGTGATTCAAATTCTTTAATTTTGTGGCATAATAGGCTTGCACATGTTGGTTTAAGCACTATTAAAAGGATTGTGAAATGTGGTTTGATTGCTTGTGATACCAAGAAATTTGAAAAGTGTGAAATATGTATTAAATCAAAGATGATTAAAAAGCCTTTTCATAGTGTTGAGAGATCATCTAATTTGCTTGATTTAATACATAGTGATCTTTGTGAACTTAATGGCATGTTAACAAGAGGTAGAAATAGAGTGGGCTCCATTACTGAAGCTGACCAGCGCAGGAAAAGGGGAATGGTTCTTCCTTTCGAACCTCTGTCTATCTCTTTTGATGAAATCAGATATGCAGTGGACATGCCACAGGAAATGAAAGCACAAGGCGTCACTGAGGACAGATTGGAACTTCTGAAAGGCGTGAGCGGTTCATTCAGGCCAGGAATCCTTACAGCCCTAATGGGTGTTACCGGTGCTGGAAAAACCACTCTGATGGATGTATTGGCTGGAAGAAAAACCAGTGGATATATTGAAGGAATTATCAAACAAACTGATATCCACTCTCCTCACGTTACAGTCTATGAGTCCTTGATTTATTCTGCATGGCTTCGGTTACCTTCTGAAGTCGATTCGGCAACCAGGAAGATGTTCATTGAGGAGGTTATGGAGCTTGTGGAACTAAACTCATTGAGGGAAGCACTTGTTGGATTGCCCAGTGAAAATGGTCTGTCAACAGAGCAGCGCAAGAGACTGACCATTGCAGTTGAGCTTGTTGCCAACCCATCTATAATATTCATGGATGAGCCAACATCTGGGCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGAAGAACTGTAGTGTGCACCATCCACCAGCCAAGCATAGATATATTTGATGCCTTTGATGAGCTACTTCTCTTGAAACGGGGAGGTGAAGAAATTTACACAGGCCCAATAGGTCACCATTCTTCCCATCTGATCAAGTACTTTGAGGGAATTAATGGAATTAGTAAGATTAAAGATGGCTATAACCCATCAACTTGGATGTTAGAGTTGACTTCGGCAGCACAAGAGGCAGCTCTAGGAGTGAACTTCACTGAAGAATACAAGAACTCTGAACTGTATAGGAGAAACAAGGCACTGATCAAGGAACTGAGTTCACCCCCTCCAGGGTCAAAAGACCTTTACTTCTCAACTCAATATTCACAATCTTTCTTCACACAATGTTTGGCTTGCCTATGGAAACAGCACTGGTCATATTGGAGAAACCCAGCATACACTGCCGTGAGATTGTTCTTCACAACCTTCATAGCTTTAATGTTTGGGACAATATTCTGGGATTCTGGCTCCAAAAGGAAAAGGCAACAGGATCTCTTCAATGCAATGGGTTCTATGTATGTTTCAGTTATCTTCATTGGGATACAAAATGCTTTCTCTGTACAGGCAGTTGTAGCCATTGAGAGAACAGTCTTTTACAGAGAAAGAGCAGCTGGAATGTATTCAGCTTTCCCATATGCCTTTGGACAGGTTATGATTGAGCTCCCACACATATTCATCCAAACCATCATCTTTGGACTTATAGTATATGCCATGGTTGGGTTTGAGTGGACAGTCACTAAATTCTTCTGGTATCTTTTCTTCATGTACTTCACCTTCTTATACTTCACATTCTATGGGATGATGGCAGTAGCCATTACTCCTAACCAACACATCTCCGGCATAGTTTCCTCTGCTTTCTATGGATTATGGAACCTCTTCTCGGGATTCATCATTCCTCACACAAGGATTCCAGTGTGGTGGAAATGGTACTTCTGGTCATGTCCGGTGTCTTGGACTTTGTATGGATTGGTTGTCACACAATTTGGGGACATAAAGGAGAGGCTTGAGAGTGGGGAAAGAGTAGAAGATTTCGTAAGGAGCTACTTTGGGTATAGAAATGACTTTGTGGGAGTTGTTGCAGGCATTGTAGTTGGGATAACTGTGCTGTTTGGATTCATCTTCGCCTACTCAATCAGGGCTTTTAACTTCCAGAAAAGATGA 3360 0.4158 MEGETIKIMNQDLVRLDRFDGSNFTRWQDKVRFLLTALKIFYILDPTLAPLPEPKENDTPQVVAARKKREEDELICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIKEESRSRDKMVEESNGGTNKANAISKANHTRGKNNNNKKNSGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFRKDQKGVVVNAIDEEIIATLSDVCVVQGKVQGWWYDTCATVHVTYDKSLFKTFEDAKGDQEVQMGNEGKSKVLGKGTIEVVFTSGKKVTLKNVLYVPDMKKNLVSGDLLGKPGIKAVFESGKLILTKSGNFVGKGYSCDGMIKLSTNDNINKMTSTSAYMCDSNSLILWHNRLAHVGLSTIKRIVKCGLIACDTKKFEKCEICIKSKMIKKPFHSVERSSNLLDLIHSDLCELNGMLTRGRNRVGSITEADQRRKRGMVLPFEPLSISFDEIRYAVDMPQEMKAQGVTEDRLELLKGVSGSFRPGILTALMGVTGAGKTTLMDVLAGRKTSGYIEGIIKQTDIHSPHVTVYESLIYSAWLRLPSEVDSATRKMFIEEVMELVELNSLREALVGLPSENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYTGPIGHHSSHLIKYFEGINGISKIKDGYNPSTWMLELTSAAQEAALGVNFTEEYKNSELYRRNKALIKELSSPPPGSKDLYFSTQYSQSFFTQCLACLWKQHWSYWRNPAYTAVRLFFTTFIALMFGTIFWDSGSKRKRQQDLFNAMGSMYVSVIFIGIQNAFSVQAVVAIERTVFYRERAAGMYSAFPYAFGQVMIELPHIFIQTIIFGLIVYAMVGFEWTVTKFFWYLFFMYFTFLYFTFYGMMAVAITPNQHISGIVSSAFYGLWNLFSGFIIPHTRIPVWWKWYFWSCPVSWTLYGLVVTQFGDIKERLESGERVEDFVRSYFGYRNDFVGVVAGIVVGITVLFGFIFAYSIRAFNFQKR* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0472 1119 FunFam ABC transporter 640 773 - -
Vvi4g0472 1119 Pfam GAG-pre-integrase domain 416 482 IPR025724 -
Vvi4g0472 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 759 IPR027417 -
Vvi4g0472 1119 Pfam Zinc knuckle 258 273 IPR001878 GO:0003676|GO:0008270
Vvi4g0472 1119 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 510 1119 - -
Vvi4g0472 1119 Gene3D - 223 313 - -
Vvi4g0472 1119 Pfam ABC transporter 569 702 IPR003439 GO:0005524
Vvi4g0472 1119 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 541 774 IPR003439 GO:0005524
Vvi4g0472 1119 Pfam gag-polypeptide of LTR copia-type 71 204 - -
Vvi4g0472 1119 Pfam ABC-2 type transporter 731 791 IPR043926 GO:0140359
Vvi4g0472 1119 SMART c2hcfinal6 258 274 IPR001878 GO:0003676|GO:0008270
Vvi4g0472 1119 Pfam ABC-2 type transporter 847 1061 IPR013525 GO:0016020|GO:0140359
Vvi4g0472 1119 ProSiteProfiles Zinc finger CCHC-type profile. 259 273 IPR001878 GO:0003676|GO:0008270
Vvi4g0472 1119 SMART AAA_5 578 751 IPR003593 GO:0016887
Vvi4g0472 1119 MobiDBLite consensus disorder prediction 200 254 - -
Vvi4g0472 1119 Gene3D - 555 767 IPR027417 -
Vvi4g0472 1119 MobiDBLite consensus disorder prediction 213 248 - -
Vvi4g0472 1119 SUPERFAMILY Retrovirus zinc finger-like domains 245 280 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0472 Vvi-Chr4 4286954 4295628 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0472 K08711 - vvi:100245568 1139.41