Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0471 ATGGAGAGTAGTGATATTAGCAGAGTAACTAGTGTACGTATTACTGCTTCTAACATACTCAGGAACAGCTCTGTGGAAGTTTTCTCGAGGTCGTCTCGGGAAGAAGATGATGAAGAAGCCCTGAAATGGGCTGCTCTCGAGAAACTGCCTACATTCCTTCGTATACAGAGAGGCATCCTCACTGAAGAAAAGGGCCAGGCAAGGGAAATTGATATAAAGAGCCTTGGGTTGCGAGAGAGGAAGAATCTGATCCAGCGGCTTGTGAAGATCGATGGGCATGATAACGAGAAGTTCTTGTTGAAGCTCAAGGAGCGGATTGATCGAGTTGGACTTGATAGTCCAACGGTTGAAGTTCGATTCGAGCACTTAACAGTTGATGCAGAGGCTTATGTTGGAAGCAGAGCATTACCCACTATATTCAACATCTCAGCAAATATTTTGGAGGGGTTCTTGAATTATCTTCACATTCTTCCTAGTAGAAAGAAACCCTTCTCAATCCTCCATGATGTTAGTGGAATCATCAAACCTCGCAGAATGGCTTTGCTTCTAGGACCTCCAAGCTCTGGGAAGACTACACTGTTATTAGCTTTGGCAGGAAGACTTGGTTCAGATCTGAAAGTTTCGGGCCGAGTTACCTACAATGGCCATGGAATGGATGAGTTTGTTCCACAGAGGACTTCAGCTTATACAAGTCAATATGATCTTCATGCTGGAGAAATGACAGTGCGAGAAACATTGGATTTTTCAGCTAGATGTCAGGGGGGTGGAGGCCTTTCCGATATGTTAGCAGAATTATCAAGAAGAGAGAAGGCTGCAAACATTAAGCCTGATCCTGATATTGATATCTACATGAAGGCTGCAGCACTAGAAGGGCAGAAGACCAGTGTAGTCACAGAATATATGCTCAAGAAGATTCTAGGACTTGAAATCTGCGCTGATACATTGGTGGGGGATGTAATGAAACGAGGCATATCCGGCGGACAAAAAAAGCGACTCACAACAGGGGAGATACTGGTTGGACCAGCCAGAGCACTTTTCATGGATGAGATATCAACTGGTTTGGATAGTTCAACAGCTTTTCAGATTGTAAATTCACTCAGGCAGTCCATCCATATGCTTAATGGAACTGCTCTTATCTCTCTCCTCCAACCAGCACCAGAAACATACAACCTATTTGATGATATAATTCTCCTCTCTGATGGAAAAATTGTGTATCAAGGTCCCTGTGAAAATGTGCTCGAGTTCTTTGGATACATGGGCTTCAAATGTCCAGAAAGGAAAGGAGTGGCTGACTTCTTACAAGAAGTGACATCAAGGAAGGATCAAGAGCAGTACTGGGCGCGTAAGGACGAGCCTTATAGCTATGTTACTGTCAAGGAATTCGCTGAAGCCTTTCAATCATTTCATATTGGTCAGAAACTAGGTGATGAGCTTGCTGTGCCATTCGATAAGACCAAAGGCCACCCTGCTGCTTTGACAACCAAAAAATATGGTATTAGCAAGAGAGAACTGTTGAGAGCTTGCACATCCAGGGAATTCTTGATTATGAAGAGGAATTCATTTGTCTATATTTTCAAAATGATCCAACTTATTATTGTGGCTTTTATAAGCATGACATTGTTTCTCCGAACTGAGATGTCGCGAAATACAGTAGAAGATGGGGGGATTTTCATGGGTGCCCTTTTCTTTGCAGTCTTGAGGATTATGTTCAATGGATTAACAGAGCTTCCCATGACCATCTTCCAACTTCCAGTCTTTTACAAGCAAAGGGGCCTTCTCTTCTTTCCCTCCTGGGCATACTCTCTATCTAAATGGATCCTCAAGATGCCAATCGCATTTGCTGAAGTTGGCGCCTGGGTGATCATGACTTATTATGTCATAGGCTTTGATCCAAACATAGAAAGGTTCTTCAAGCAATATTTGCTACTGCTATGCATTCACCAGATGGCTTCAGGACTTCTTCGGTTGATGGCGGCATTGGGAAGGAACATCATAGTTGCAAGCACATTTGGCTCATTTCCATTACTTCTAGTAGTGGTTTTGGGTGGATTTGTCTTGTCAAAAGATGATGTGAAGCCATGGTGGGAATGGGGTTATTGGGTCTCACCTTTGATGTATGGGCAGAATGCCATAAGTGTGAATGAATTCCTTGGGAACAGCTGGAGACATGTTCCGGCTAACTCAACAGAATCATTAGGAGTACTAGTCTTGAAAGCTCGTGGGGCTTTCACAGAACCACACTGGTATTGGCATTTGGGAAGCCTCAACCAATTCTATCCAAGGAGACCTTAA 2292 0.4346 MESSDISRVTSVRITASNILRNSSVEVFSRSSREEDDEEALKWAALEKLPTFLRIQRGILTEEKGQAREIDIKSLGLRERKNLIQRLVKIDGHDNEKFLLKLKERIDRVGLDSPTVEVRFEHLTVDAEAYVGSRALPTIFNISANILEGFLNYLHILPSRKKPFSILHDVSGIIKPRRMALLLGPPSSGKTTLLLALAGRLGSDLKVSGRVTYNGHGMDEFVPQRTSAYTSQYDLHAGEMTVRETLDFSARCQGGGGLSDMLAELSRREKAANIKPDPDIDIYMKAAALEGQKTSVVTEYMLKKILGLEICADTLVGDVMKRGISGGQKKRLTTGEILVGPARALFMDEISTGLDSSTAFQIVNSLRQSIHMLNGTALISLLQPAPETYNLFDDIILLSDGKIVYQGPCENVLEFFGYMGFKCPERKGVADFLQEVTSRKDQEQYWARKDEPYSYVTVKEFAEAFQSFHIGQKLGDELAVPFDKTKGHPAALTTKKYGISKRELLRACTSREFLIMKRNSFVYIFKMIQLIIVAFISMTLFLRTEMSRNTVEDGGIFMGALFFAVLRIMFNGLTELPMTIFQLPVFYKQRGLLFFPSWAYSLSKWILKMPIAFAEVGAWVIMTYYVIGFDPNIERFFKQYLLLLCIHQMASGLLRLMAALGRNIIVASTFGSFPLLLVVVLGGFVLSKDDVKPWWEWGYWVSPLMYGQNAISVNEFLGNSWRHVPANSTESLGVLVLKARGAFTEPHWYWHLGSLNQFYPRRP* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0471 763 Pfam Plant PDR ABC transporter associated 721 750 IPR013581 -
Vvi4g0471 763 Pfam ABC transporter 167 350 IPR003439 GO:0005524
Vvi4g0471 763 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 6 751 - -
Vvi4g0471 763 Pfam ABC-transporter N-terminal 82 142 IPR029481 -
Vvi4g0471 763 Gene3D - 154 465 IPR027417 -
Vvi4g0471 763 SMART AAA_5 176 402 IPR003593 GO:0016887
Vvi4g0471 763 Pfam ABC-2 type transporter 383 436 IPR043926 GO:0140359
Vvi4g0471 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 437 IPR027417 -
Vvi4g0471 763 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 425 IPR003439 GO:0005524
Vvi4g0471 763 FunFam ABC transporter G family member 34 154 459 - -
Vvi4g0471 763 Pfam ABC-2 type transporter 504 716 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0471 Vvi-Chr4 4282427 4286094 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0471 K08711 - vvi:100245568 1400.96