Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0470 ATGACTTTGCTTCTAGGACCTCCAAGCTCTGGGAAGACTACACTGTTATTAGCTTTGGCAGGAAGACTTGGTTCAGATCTGAAGGTTTCGGGCCGAGTTACCTACAATGGCCATGGAATGGATGAGTTTGTTCCACAGAGGACTTCAGCTTATACAAGTCAATATGATCTTCATGCTGGAGAAATGACAGTGCGAGAAACATTAGATTTTTCAGCTAGATGTCAGGGGGTTGGAGGCCTTTCTGATATGTTAGCCGAATTATCAAGAAGAGAGAAGGCTGCAAACATTAAGCCTGATCCTGATATTGATATCTACATGAAGGCTGCAGCACTAGAAGGGCAGAAGACCAGTGTAGTCACAGAATATATGCTCAAGATTCTAGGACTTGAAATCTGCGCCGATACATTGGTGGGGGATGTAATGAAACAAGGCATATCCGGCGGACAAAAAAAGCGACTCACAACAGGGGAGATACTGGTTGGACCAGCCAGAGCACTTTTCATGGATGAGATATCAACTGGTTTGGATAGTTCAACAGCTTTTCAGATTGTAAATTCACTCAGGCAGTCCATCCATATTCTTAATGGAACTGCTCTTATCTCTCTCCTCCAACCAGCACCAGAAACATACAACCTATTTGATGATATAATTCTCCTTTCTGATGGAAAAATTGTGTATCAAGGTCCCTGTGAAAATGTGCTCGAGTTCTTTGGATACATGGGCTTCAAATGTCCAGAAAGGAAAGGAGTGGCTGACTTCTTACAAGAAGTGACATCAAGGAAGGATCAAGAGCAGTACTGGGCGCGTAAGGACGAGCCTTATAGCTACGTTACTGTCAAGGAATTCGCTGAAGCGTTTCAATCATTTCATATTGGTCAGAAACTAGGTGATGAGCTTGCTGTGCCATTCGATAAGACCAAAGGCCACCCTGCTGCTTTGACAACCAAAAAATATGGAATTCATTTGAAGAGGAATTCATTTCTTATTATTGTGGCTTTTATAAACATGACATTGTTTCTCCGAACTGAGATGTCGCGAAATACAGTAGAAGATGGGGGGATTTTCATGGGTGCCCTTTTCTTTGCAGTCTTGATGATTATGTTCAATGGATTCACAGAGCTTCCCATGACCATCTTCCAACTTCCAGTCTTTTACAAGCAAAGGGACCTTCTCTTCTTTCCCTCCTGGGCATACTCTCTACCTAAATGGATCCTCAAGATGCCAATCGCATTTGCTGAAGTTGGTGCCTGGGTGATCATGACTTATTATGTCATAGGCTTTGATCCAAACATAGAAAGGTTCTTCAAGCAATATTTGCTACTGCTATGCATTCACCAGATGGCTTCAGGACTTCTTCGGTTGATGGCGGCATTGGGAAGGAACATCATAGTTGCAAACACATTTGGCTCATTTGCATTACTTGTAGTCATGGTTTTGGGTGGATTTGTCTTGTCAAAAGATGATGTGAAGACATGGTGGGAATGGGGTTATTGGGTCTCACCTTTGATGTATGGGCAGAATGCTATTAGTGTGAATGAATTCCTTGGGAACAGCTGGAGACATGTTCCGGCTAACTCAACAGAATCATTAGGAGTTCTAGTCTTGAAAGCTCGTGGGGTTTTCACAGAACCACACTGGTATTGGCTGGGAGTAGGAGCTTTGATTGGATATGTGCTCCTATTCAATTTCCTCTTCACTTTGGCTCTATCATATCTAAATCCATTTGGGAAGTCTCAACCAATTCTATCCAAAGAGACCTTAACTGAGAAACAAGCTAACAGAACAGAAGAGTTGATTGAGCTGTCACCAGAAACGGGAGCAAGAATTCAAAGTGGATCATCCAGGTCATTGTCTGCAAGAGTGGGCTCCATTACTGAAGCTGACCAGAGCAGGAAAAGGGGAATGGTTCTTCCTTTCGAACCTCTGTCTATCTCTTTTGATGAAATCAGATATGCAGTGGACATGCCACAGGAAATGAAAGCACAAGGCATCACTGAGGACAGATTGGAACTTTTGAGAGGCGTGAGCGGTTCATTCAGGCCAGGAATCCTTACAGCCCTAATGGGTGTTACCGGTGCTGGAAAAACTACTCTGATGGATGTATTGGCCGGAAGAAAAACCAGTGGATATATTGAAGGAATTATCAAAGTGTACGGGTACCCAAAGAAACAGGAAACTTTTGCTCGTGTGTTGGGATATTGTGAGCAAACTGATATCCACTCTCCTCACGTTACAGTCTATGAGTCCTTGCTTTATTCTGCATGGCTTCGGTTACCTTCTGAAGTCGATTCGGCAACCAGGAAGATGTTCATTGAGGAGGTTATGGAGCTTGTGGAACTAAACTCATTGAGGGAAGCACTTGTTGGATTGCCCAGTGAAAATGGTCTGTCAACAGAGCAGCGCAAGAGACTGACCATTGCAGTTGAGCTTGTTGCCAACCCATCTATAATATTCATGGATGAGCCAACATCTGGGCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGAAGAACTGTAGTGTGCACCATCCACCAGCCAAGCATAGATATATTTGATGCCTTTGATGAGCTACTTCTCTTGAAACGGGGAGGCGAAGAAATTTACGCAGGCCCAATAGGTCGCCATTCTTCCCATCTGATCAAGTACTTTGAGGGAATTAATGGAGTTAGTAAGATTAAAGATGGTTATAACCCATCAACTTGGATGTTAGAGGTGACTTCGGCAGCACAAGAGGTAGCTCTAGGAGTGAACTTCACTGAAGAATACAAGAACTCAGAACTGTATAGGAGAAACAAGGCATTGATCAAGGAACTGAGTTCACCCCCTCCAGGGTCAAAAGACCTTTACTTCTCAACTCAATATTCACAATCTTTCTTCACACAATGTTTGGCTTGCCTATGGAAACAGCACTGGTCATATTGGAGAAACCCAGCATACACTGCCGTGAGATTGTTCTTCACAACCTTCATAGCTTTAATGCTTGGGACAATATTCTGGGATTTTGGCTCCAAAAGGAAAAGGCAACAGGATCTCTTCAATGCAATGGGTTCTATGTATGCTGCAGTTATCTCCATAGGGATACAAAATGCCTCATCTGTACAGGCAGTTGTAGCCATTGAGAGAACAGTCTTTTACAGAGAAAGAGCAGCTGGAATGTATTCACCTTTCCCATATGCCTTTGGACAGGTTATGATTGAGCTCCCACACATATTCATCCAAACCATCATCTATGGACTTATAGTATATGCCATGGTTGGGTTTGAGTGGACAGTCACTAAATTCTTCTGGTATCTTTTCTTCATGTACTTCACCTTCTTATACTTCACATTCTATGGGATGATGGCAGTAGCCATTACTCCTAACCAACACATCTCCGGCATAGTTTCCTCTGCTTTCTATGGATTATGGAACCTCTTCTCGGGATTCATCATTCCGCACACAAGGATTCCAGTGTGGTGGAAATGGTACTTCTGGTCATGTCCGGTGTCTTGGACTTTGTATGGATTGCTTGTCACACAATTTGGGGACATAAAGGAGAGGCTTGAGAGTGGGGAAAGAGTAGAAGATTTCGTAAGGAGCTACTTTGGGTATAGAAATGACTTTGTGGGAGTTGTTGCAGGCATCGTAGTTGGGATAACTGTGCTGTTTGGATTCATCTTCGCCTACTCAATCAGGGCTTTTAACTTCCAGAAAAGATGA 3726 0.4337 MTLLLGPPSSGKTTLLLALAGRLGSDLKVSGRVTYNGHGMDEFVPQRTSAYTSQYDLHAGEMTVRETLDFSARCQGVGGLSDMLAELSRREKAANIKPDPDIDIYMKAAALEGQKTSVVTEYMLKILGLEICADTLVGDVMKQGISGGQKKRLTTGEILVGPARALFMDEISTGLDSSTAFQIVNSLRQSIHILNGTALISLLQPAPETYNLFDDIILLSDGKIVYQGPCENVLEFFGYMGFKCPERKGVADFLQEVTSRKDQEQYWARKDEPYSYVTVKEFAEAFQSFHIGQKLGDELAVPFDKTKGHPAALTTKKYGIHLKRNSFLIIVAFINMTLFLRTEMSRNTVEDGGIFMGALFFAVLMIMFNGFTELPMTIFQLPVFYKQRDLLFFPSWAYSLPKWILKMPIAFAEVGAWVIMTYYVIGFDPNIERFFKQYLLLLCIHQMASGLLRLMAALGRNIIVANTFGSFALLVVMVLGGFVLSKDDVKTWWEWGYWVSPLMYGQNAISVNEFLGNSWRHVPANSTESLGVLVLKARGVFTEPHWYWLGVGALIGYVLLFNFLFTLALSYLNPFGKSQPILSKETLTEKQANRTEELIELSPETGARIQSGSSRSLSARVGSITEADQSRKRGMVLPFEPLSISFDEIRYAVDMPQEMKAQGITEDRLELLRGVSGSFRPGILTALMGVTGAGKTTLMDVLAGRKTSGYIEGIIKVYGYPKKQETFARVLGYCEQTDIHSPHVTVYESLLYSAWLRLPSEVDSATRKMFIEEVMELVELNSLREALVGLPSENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYAGPIGRHSSHLIKYFEGINGVSKIKDGYNPSTWMLEVTSAAQEVALGVNFTEEYKNSELYRRNKALIKELSSPPPGSKDLYFSTQYSQSFFTQCLACLWKQHWSYWRNPAYTAVRLFFTTFIALMLGTIFWDFGSKRKRQQDLFNAMGSMYAAVISIGIQNASSVQAVVAIERTVFYRERAAGMYSPFPYAFGQVMIELPHIFIQTIIYGLIVYAMVGFEWTVTKFFWYLFFMYFTFLYFTFYGMMAVAITPNQHISGIVSSAFYGLWNLFSGFIIPHTRIPVWWKWYFWSCPVSWTLYGLLVTQFGDIKERLESGERVEDFVRSYFGYRNDFVGVVAGIVVGITVLFGFIFAYSIRAFNFQKR* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0470 1241 Pfam ABC-2 type transporter 969 1183 IPR013525 GO:0016020|GO:0140359
Vvi4g0470 1241 Pfam ABC-2 type transporter 329 514 IPR013525 GO:0016020|GO:0140359
Vvi4g0470 1241 Gene3D - 1 286 IPR027417 -
Vvi4g0470 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 879 IPR027417 -
Vvi4g0470 1241 Gene3D - 658 887 IPR027417 -
Vvi4g0470 1241 Pfam Plant PDR ABC transporter associated 519 581 IPR013581 -
Vvi4g0470 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 246 IPR027417 -
Vvi4g0470 1241 Pfam ABC transporter 672 824 IPR003439 GO:0005524
Vvi4g0470 1241 FunFam ABC transporter G family member 40 658 888 - -
Vvi4g0470 1241 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 1241 - -
Vvi4g0470 1241 CDD ABCG_PDR_domain2 641 879 IPR034003 -
Vvi4g0470 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 896 IPR003439 GO:0005524
Vvi4g0470 1241 SMART AAA_5 681 873 IPR003593 GO:0016887
Vvi4g0470 1241 SMART AAA_5 1 223 IPR003593 GO:0016887
Vvi4g0470 1241 Pfam ABC transporter 2 171 IPR003439 GO:0005524
Vvi4g0470 1241 Pfam ABC-2 type transporter 204 256 IPR043926 GO:0140359
Vvi4g0470 1241 Pfam ABC-2 type transporter 853 915 IPR043926 GO:0140359
Vvi4g0470 1241 FunFam ABC transporter G family member 34 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0470 Vvi-Chr4 4259429 4265236 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0470 K08711 - vvi:100245568 2419.04