Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0467 ATGGAGAGTAGCGATGTGTACAGAGTCAACAGTGCACGTCTGAGCAGTTCTAACATATGGAGGAACAGTGGCATGGAAGTTTTCTCAAGGTCTTCTCGAGATGAAGACGATGAAGAAGCACTTAAATGGGCTGCTATAGAGAAACTTCCAACATATCTACGTATAAGGAGGGGCATACTTGCTGAAGAAGAGGGTAAAGCAAGAGAAATTGACATAACAAGTCTTGGGTTGATTGAGAAAAAGAATTTGTTAGAGAGGCTTGTGAAAATAGCAGAGGAAGATAATGAGAAGTTCTTGTTAAAACTCAAGGAGCGCATTGATCGAGTTGGACTTGATATTCCAACCATTGAAGTTCGGTTTGAGCATATAACAGTGGATGCAGAAGCATATATAGGAGGCAGAGCACTACCTACAATAATCAATTTCTCTGCTAATATGTTAGAGGGGTTCTTGAATTATCTTCACATTCTTCCAAGTAGAAAAAAACCACTACCAATCCTCCATGATGTTAGTGGAATCATCAAGCCTGGCAGGATGACACTACTCTTAGGCCCGCCAAGTTCTGGAAAGACTACATTGTTATTGACATTGGCAGGAAAACTTGGCTCAGATCTGAAACTTTCAGGGAGAGTTTCCTACAATGGCCATGGGATGGATGAGTTTGTTCCACAGAGGAGTTCAGCTTACATAAGTCAATATGATCTCCATATAGGAGAAATGACTGTCAGAGAAACATTAGCTTTCTCAGCAAGATGTCAAGGTGTTGGAACCGGTTATGATATGTTAGCAGAATTATCAAGAAGAGAGAAGGTGGCAAACATTAAGCCTGATCCAGATATTGATATTTATATGAAGGCAGCAGCACTAAAAGGGCAGGGGGGCAGTTTAATTACAGACTATATTCTCAAGATCTTGGGACTTGAAGTCTGTGCTGATACTATAGTAGGGGATGAAATGGTACGAGGCATCTCTGGCGGGCAAAAAAGGCGACTCACAACAGGAGAGATGCTGGTTGGACCGGCTAAAGCACTTTTCATGGATGAGATATCAACTGGTTTGGACAGTTCAACTACTTTTCAGATTGTAAATTCAATCAGGCAGTCCATCCACATCCTCAAGGGAACTGCTATTATCTCCCTCCTCCAGCCAGCACCAGAAACCTATGACCTATTCGATGATATAATTCTCCTTTCTGATGGGCAAATTGTGTATCAAGGTCCCCGTGAAAATGTGCTAGAGTTCTTTGAACACATGGGTTTCAAATGTCCCGAGAGAAAAGGAGTGGCTGACTTCTTACAAGAAGTGACATCAAAGAAGGATCAAGAGCAGTATTGGGCTCATAGAGGTGAACCTTATAGTTTTGTTACCGTCACAGAATTTTCTGAAGCATTTCAATCGTTTCATGTTGGTCGGAGGCTAGGTGATGAACTTGCTATTCCGTTTGACAAGGCCAAGGCCCACACCGCTGCTTTAACGACTAAGAAGTATGGTGTTAGCAAGAAGGAACTATTGAAAGCTTGCATATCAAGAGAACTCTTGCTTATGAAAAGGAACTCATTTGTTTACATTTTCAAAATGAGCCAACTTATTCTTCTCGCTTTTATAATGATGACATTATTTCTAAGAACCGATATGCCACGGAAAACGATAGCAGATGGCTGGATTTTTTTGGGTTCTATGTTCTTCACGTTGATGATGATCATGTTTAATGGATTTTCAGAGCTTGCCCTGACAATCATGAAACTTCCAGTCTTTTACAAACAAAGGGACCTACTTTTCTATCCTTCATGGGCATACTCTCTACCCACATGGATTCTCAAGATCCCAATCACACTTGTAGAAGTGGCCATTTGGGTGTTCATGACTTATTATGTTGTTGGCTTTGATCCAAACATTGAAAGGTTTTTCAGACAGTACTTGTTACTCCTATGTGTTAACCAGATGGCATCAGGACTTCTTCGACTCATGGCAGCACTAGGAAGGAACATCATAGTCGCAAATACATTTGGCTCATTTGCGTTACTTGCAGTTTTAGTTATGGGAGGATTCGTCTTATCAAAAGATGATGTAAAGCCGTGGTGGATGTGGGGTTATTGGATTTCACCTATGATGTACGGGCAGAATGCCATAGCTGTGAACGAATTCCTTGGGAAGAGTTGGAGACATGTTCCTGAAAATGCAACAGAACCGTTAGGTGTTTTAGTCTTGAAATCTCGAGGAATCTTCCCAGAGGCATATTGGTATTGGCTGGGAGTAGGAGCTTTGATCGGATATGTTTTCCTATTCAATTTCCTATTCACTGTGGCCCTAGCTTATCTCAATCCATATGGGAAGCATCAGACAGTTCTATCTGAAGAGACCCTAACCGAGCAATCATCAAGAGGAACAAGCTGTACTGGAGGAGACAAAATTCGAAGTGGATCATCCAGATCATTGTCTGCAAGAGTGGGGTCCTTTAACAATGCTGATCAAAACAGGAAGAGGGGAATGATTCTTCCTTTTGAACCTCTTTCCATTACTTTTGATGAAATCCGATATGCAGTAGATATGCCACAGGAAATGAAATCACAAGGCATCCCTGAGAACCGACTAGAACTTTTGAAAGGCGTGAGCGGTTCTTTTAGGCCAGGAGTCCTTACGGCTTTAATGGGTGTTAGTGGTGCTGGCAAAACCACTCTAATGGATGTATTGGCTGGCCGGAAAACTGGTGGATATATTGATGGAAGCATCAAGATATCTGGTTACCCAAAGAATCAAAAGACATTTGCTCGCATATCAGGATATTGCGAGCAAACTGATATCCACTCTCCTCATGTTACAGTCTATGAGTCCTTGCTTTATTCTGCATGGCTTCGGTTACCTCCTGAAGTTGATTCTGCAACCAGAAAGATGTTCATTGAAGAGGTAATGGAGCTTGTGGAACTGAATTCATTGAGGCAAGCACTAGTTGGATTGCCAGGTGTGGATGGTCTCTCAACCGAGCAGCGCAAGAGGCTGACCGTTGCAGTCGAGCTTGTAGCAAACCCATCTATAATATTCATGGATGAACCAACCTCTGGGCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGACGAACTGTGGTGTGCACTATCCACCAGCCAAGCATTGATATATTTGATGCTTTTGATGAGCTATTTCTTTTGAAACGAGGAGGAGAAGAAATATATGCAGGCCCATTAGGCCACCATTCTGCACATCTGATTAAGTACTTTGAGGGAATTGATGGAGTCAGTAAGATAAAAGATGGTTACAATCCGGCAACTTGGATGTTGGAAGTGACTTCAGCAGCACAAGAAGCAGCTCTAGGCATTAACTTCACCGATGTGTACAAGAACTCTGAACTATATAGGAGAAACAAAGCATTGATCAAGGAACTCAGTACACCTCCTCCGGGTTCAAAAGATCTTTACTTCCCTACTCAATATTCACAATCTTTCTTCGCACAATGTAAGACTTGCTTATGGAAGCAACATTGGTCATATTGGCGAAACCCATCATACACAGCAGTGAGACTCTTATTCACAACTTTCATAGCTTTAATGTTTGGCACGATATTCTGGGATCTTGGCTCTAGAAGGCAAAGGAAACAGGATCTCTTCAATGCAATGGGTTCCATGTATTGTGCTGTTCTCTTTATTGGGGCACAAAATGCCACATCGGTGCAGCCTGTTGTGGCCATTGAGAGAACAGTCTTTTACAGAGAAAAAGCTGCTGGAATGTATTCAGCTTTGCCATATGCCTTTGGACAGGTCATGATTGAGCTCCCATACATACTCATTCAGACAATCATCTATGGAGTTATAGTGTATGCCATGATTGGTTTTGACTGGACCATGACCAAGTTCTTTTGGTATATCTTTTTCATGTACTTCACCTTCTTATACTTCACTTTCTACGGAATGATGGCCGTGGCTGTCTCTCCAAACCACAACATTGCCGCCATAATTTCCTCTGCCTTCTATGCAATATGGAACCTTTTCTCAGGATTTATTGTTCCACGAACAAGAATTCCTGTGTGGTGGAGATGGTACTATTGGTGTTGCCCCATCTCTTGGACTTTGTATGGATTGATTGGTTCACAATTTGGAGACATGAAGGACAAACTAGATACAGGTGAAACAATAGAAGACTTCGTAAGGAGTTACTTTGGGTTTAGAAATGACTTTCTGGGAATTGTTGCAGTTGTTATAGTAGGGATAACTGTGCTGTTTGGATTCACCTTTGCCTATTCAATAAGGGCATTCAACTTCCAAAAAAGATAA 4311 0.4194 MESSDVYRVNSARLSSSNIWRNSGMEVFSRSSRDEDDEEALKWAAIEKLPTYLRIRRGILAEEEGKAREIDITSLGLIEKKNLLERLVKIAEEDNEKFLLKLKERIDRVGLDIPTIEVRFEHITVDAEAYIGGRALPTIINFSANMLEGFLNYLHILPSRKKPLPILHDVSGIIKPGRMTLLLGPPSSGKTTLLLTLAGKLGSDLKLSGRVSYNGHGMDEFVPQRSSAYISQYDLHIGEMTVRETLAFSARCQGVGTGYDMLAELSRREKVANIKPDPDIDIYMKAAALKGQGGSLITDYILKILGLEVCADTIVGDEMVRGISGGQKRRLTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNSIRQSIHILKGTAIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWAHRGEPYSFVTVTEFSEAFQSFHVGRRLGDELAIPFDKAKAHTAALTTKKYGVSKKELLKACISRELLLMKRNSFVYIFKMSQLILLAFIMMTLFLRTDMPRKTIADGWIFLGSMFFTLMMIMFNGFSELALTIMKLPVFYKQRDLLFYPSWAYSLPTWILKIPITLVEVAIWVFMTYYVVGFDPNIERFFRQYLLLLCVNQMASGLLRLMAALGRNIIVANTFGSFALLAVLVMGGFVLSKDDVKPWWMWGYWISPMMYGQNAIAVNEFLGKSWRHVPENATEPLGVLVLKSRGIFPEAYWYWLGVGALIGYVFLFNFLFTVALAYLNPYGKHQTVLSEETLTEQSSRGTSCTGGDKIRSGSSRSLSARVGSFNNADQNRKRGMILPFEPLSITFDEIRYAVDMPQEMKSQGIPENRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKNQKTFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSATRKMFIEEVMELVELNSLRQALVGLPGVDGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYAGPLGHHSAHLIKYFEGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNSELYRRNKALIKELSTPPPGSKDLYFPTQYSQSFFAQCKTCLWKQHWSYWRNPSYTAVRLLFTTFIALMFGTIFWDLGSRRQRKQDLFNAMGSMYCAVLFIGAQNATSVQPVVAIERTVFYREKAAGMYSALPYAFGQVMIELPYILIQTIIYGVIVYAMIGFDWTMTKFFWYIFFMYFTFLYFTFYGMMAVAVSPNHNIAAIISSAFYAIWNLFSGFIVPRTRIPVWWRWYYWCCPISWTLYGLIGSQFGDMKDKLDTGETIEDFVRSYFGFRNDFLGIVAVVIVGITVLFGFTFAYSIRAFNFQKR* 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0467 1436 CDD ABCG_PDR_domain1 146 406 IPR034001 -
Vvi4g0467 1436 CDD ABCG_PDR_domain2 836 1074 IPR034003 -
Vvi4g0467 1436 SMART AAA_5 176 408 IPR003593 GO:0016887
Vvi4g0467 1436 SMART AAA_5 876 1068 IPR003593 GO:0016887
Vvi4g0467 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Vvi4g0467 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Vvi4g0467 1436 FunFam ABC transporter G family member 40 853 1083 - -
Vvi4g0467 1436 Pfam Plant PDR ABC transporter associated 720 782 IPR013581 -
Vvi4g0467 1436 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 7 1436 - -
Vvi4g0467 1436 Pfam ABC-2 type transporter 382 433 IPR043926 GO:0140359
Vvi4g0467 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 839 1091 IPR003439 GO:0005524
Vvi4g0467 1436 Pfam ABC-transporter N-terminal 85 142 IPR029481 -
Vvi4g0467 1436 Gene3D - 854 1083 IPR027417 -
Vvi4g0467 1436 MobiDBLite consensus disorder prediction 788 810 - -
Vvi4g0467 1436 Gene3D - 153 455 IPR027417 -
Vvi4g0467 1436 FunFam ABC transporter G family member 34 154 458 - -
Vvi4g0467 1436 Pfam ABC transporter 867 1019 IPR003439 GO:0005524
Vvi4g0467 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 863 1074 IPR027417 -
Vvi4g0467 1436 Pfam ABC-2 type transporter 1165 1378 IPR013525 GO:0016020|GO:0140359
Vvi4g0467 1436 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Vvi4g0467 1436 Pfam ABC transporter 167 349 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0467 Vvi-Chr4 4227123 4234518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0467 K08711 - vvi:100250693 2794.22