Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0453 ATGCAAATGGTGGGTATGGAGCTTGATGAGATCAGTCTTGTTTCTGTTTTGCCAGCTTGTGCCCAGGTGGGAGCTCTTGAGTTAGGGAAATGGATACGTATTTATGCAGATAAAGCCGGGTTTTTGCGCGACATTTGTGTTTGTAATGCTTTGATCGAAGTGTATGCAAAACGTGGAAGGCTAGCAAATCATGGAAGAGCTCGTGAAGCTATTGAATTGTTTCAAGAAATGCAGAAGGCAAAGGTGGAACCCAACATCATCACCTTTGTTGGTCTTTTATCAGCTTGTGCCCATGCTGGCCTTTTGAATGAGGGATTGGGGTACTTTGAGTCAATGGAAAGAGATGACAATATAGAACCAGGGGTTGAGCATTATGGTTGTTTGGTCAATCTTCTTGGTCTTTCTGGGCGCCTTGATCAGGCTTTTGAACTCATAAAGAAGATGCCAATGAAGCCGAATTCGGCTATTTGGGGTTTGTTATTGAGTTCCTGCAGAAGTCACGGCAATCTCAAGATTGCAGCCATTGCAATGGAGCATCTGCTACTGCTGGAGCTTGAACCAGACGATACGGGGAACCATGTCTTGCTTTCAAATCTTTATGCAGACTTGGGAAAGGGGGATGGTGTATCGAGGATGAGGAAACTCATGAGTAGTAAGTACATGAACAAGACACCAGGGTGTAGTTCAATTGAGGTGGACAATATGGTTCAAGAATATGCATCAGGTGATGATTCAAAACCATTTTCCAAAGCATATATAGGGTACTAA 768 0.4349 MQMVGMELDEISLVSVLPACAQVGALELGKWIRIYADKAGFLRDICVCNALIEVYAKRGRLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQAFELIKKMPMKPNSAIWGLLLSSCRSHGNLKIAAIAMEHLLLLELEPDDTGNHVLLSNLYADLGKGDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASGDDSKPFSKAYIGY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0453 255 NCBIfam pentatricopeptide repeat 61 86 IPR002885 -
Vvi4g0453 255 NCBIfam pentatricopeptide repeat 87 120 IPR002885 -
Vvi4g0453 255 FunFam Uncharacterized protein 102 252 - -
Vvi4g0453 255 Gene3D Tetratricopeptide repeat domain 1 245 IPR011990 GO:0005515
Vvi4g0453 255 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 62 IPR046960 GO:0003723|GO:0009451
Vvi4g0453 255 Pfam PPR repeat family 44 97 IPR002885 -
Vvi4g0453 255 Pfam E motif 167 231 IPR046848 -
Vvi4g0453 255 Pfam PPR repeat 124 149 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0453 Vvi-Chr4 4088095 4088938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0453 11 247 Glycoside Hydrolase AT3G49170 34.733 4.74e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0453 - - vvi:109122451 493.812