Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0452 ATGTGTTATAATCTGGGAAAACAAGTTCATGGGCATGCGTTCAAATTTGGGCCAAAGTCCAATACAGTGATTGAAAATTCTCTTGTGGAAATGTATGTAAAATGTGATAGCTTGGATGATGCCCACAGGGTGTTTGAGGAAATGACCGAAAGGGATGCAGTTTCTTGGAATACCCTCATTTCAGGGCATGTTAGATTAGGGCAGATGAGAAGGGCAAGGGCTATCTTTGAGGAGCTGCAGGACAAGACCATTTTTTCTTGGACAGCTATCGTTTCCGGGTATGCTCGCATTGGGTGCCATGCAGTTGCATTGGAATTTTTCCGGAGAATGCAAATGGTGGATATTGAGCTTGATGAGATCAGTCTTGTTTCTGTTTTACCAGCTTGTGCCCAGCTGGGAGCTCTTGAGTTAGGGAAATGGATACATATTTATGCAGATAAAGCCGGGTTTTTGCGCGACATTTGTGTTTGTAATGCTTTGATCGAAGTGTATGCAAAACGTGGAAGTATGGATGAAGGGCGTCGCTTGTTTCATAAGATGAATGAGAGGGATGTGATATCTTGGGAGTACAATGATTGTAGGGCTAGCAAATCATGGAAGAGCTCGTGA 609 0.4335 MCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWEYNDCRASKSWKSS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0452 202 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 86 IPR002885 -
Vvi4g0452 202 Pfam PPR repeat 156 184 IPR002885 -
Vvi4g0452 202 Pfam PPR repeat 54 82 IPR002885 -
Vvi4g0452 202 Pfam PPR repeat 85 111 IPR002885 -
Vvi4g0452 202 Pfam PPR repeat 26 51 IPR002885 -
Vvi4g0452 202 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 21 51 IPR002885 -
Vvi4g0452 202 Gene3D Tetratricopeptide repeat domain 26 135 IPR011990 GO:0005515
Vvi4g0452 202 Gene3D Tetratricopeptide repeat domain 136 190 IPR011990 GO:0005515
Vvi4g0452 202 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 188 IPR046960 GO:0003723|GO:0009451
Vvi4g0452 202 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Vvi4g0452 202 NCBIfam pentatricopeptide repeat 26 52 IPR002885 -
Vvi4g0452 202 NCBIfam pentatricopeptide repeat 156 185 IPR002885 -
Vvi4g0452 202 NCBIfam pentatricopeptide repeat 54 82 IPR002885 -
Vvi4g0452 202 NCBIfam pentatricopeptide repeat 85 119 IPR002885 -
Vvi4g0452 202 FunFam Pentatricopeptide repeat-containing protein At5g44230 13 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0452 Vvi-Chr4 4076038 4076646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0452 5 188 Glycoside Hydrolase AT3G49170 32.065 5.98e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0452 - - vvi:100264715 352.443