Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0451 ATGCAGAAGGCAAAGGTGGAACCCAACATCATCACCTTTGTTGGTCTTTTATCAGCTTGTGCCCATGCTGGCCTTTTGAATGAAGGATTGGGGTACTTTGAGTCAATGGAAAGAGATGACAATATAGAACCAGGGGTTGAGCATTATGGTTGTTTGGTCAATCTTCTTGGTCTTTCTGGGCGCCTTGATCAGGCTCTTGAACTCATAAAGAAGATGCCAATGAAGCCGGATTCGGATATTTGGGGTTTGTTATCGAGTTCCTGCAGAAGTCACGGCAATCTCGAGATTGTAGCCATTGCAATGGAGCATCTGCTCGAGCTTGAACCAGACGATACGGGGAACTACTTGGGAAAGTGGGATGGTGTATCGAGGATGAGGAAACTCATGAGTAGTAAGTACATGAACAAGACACCAGGGTGTAGTTCAATTGAGGTGGACAATATGGTTCAAGAATATGCATCAGGTGATGATTCAAAACCATTTTCCAAAGCTATATATAGGGTACTAAAGCTGCTGGTTATGCATCAGAGCAAAATGGATGATGATATCATCGAAATTATGGTTCATGACATAAGCTAA 579 0.4301 MQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASGDDSKPFSKAIYRVLKLLVMHQSKMDDDIIEIMVHDIS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0451 192 FunFam Uncharacterized protein 26 165 - -
Vvi4g0451 192 NCBIfam pentatricopeptide repeat 11 44 IPR002885 -
Vvi4g0451 192 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 176 IPR046960 GO:0003723|GO:0009451
Vvi4g0451 192 Pfam PPR repeat 48 73 IPR002885 -
Vvi4g0451 192 Pfam PPR repeat 12 39 IPR002885 -
Vvi4g0451 192 Gene3D Tetratricopeptide repeat domain 1 164 IPR011990 GO:0005515
Vvi4g0451 192 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vvi4g0451 192 Pfam E motif 91 144 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0451 Vvi-Chr4 4068109 4069812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0451 6 173 Glycoside Hydrolase AT3G49170 37.853 8.35e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0451 - - vri:117912081 352.829