Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0449 ATGGAAGATATGTTTGTACCCATCTTGAAAGACTGCCCCAACATAGTAGAATTGAAGAAAATCCATGCCCACATTGTCAAGTTTTCACTCTCACAAAGTAGCTTTTTGGTGACAAAAATGGTGGACGTGTGTAATCACTATGGAGAAACAGAGTATGCAAATTTGTTATTCAAAGGAGTGGCTGACCCAAATGCTTTCTTGTACAATGCAATGATCAGAGCTTATAAGCATAACAAAGTTTACGTCCTAGCAATCACTGTTTACAAGCAAATGCTTGGAAACCCCCATGGTGAAAACCCCATTTTTCCTGACAAATTCACCTTCCCATTTGTTGTTAAATCATGTGCAGGGCTTATGTGTTATGATCTGGGAAAGCAAGTTCATGGGCATGTGTTCAAATTTGGGCAAAAGTCCAATACAGTCGTTGAAAATTCACTTGTGGAAATGTATGTAAAATGTGATAGCTTGGATGATGCCCACAGGGTGTTTGAGGAAATGACTGAAAGAGATGCAGTTTCTTGGAATACCCTCATTTCAGGGCATGTTAGATTAGGGCAGATGAGAAGGGCAAGAGCTATCTTTGAGGAGATGCAGGACAAGACCATTTTTTCTTGGACAGCTATCGTTTCCGGGTATGCTCGAATTGGGTGCTATGCAGATGCATTGGAATTTTTCCGGAGAATGCAAATGGTCGGTATTGAGCCGGATGAGATCAGTCTTGTTTCTGTTTTACCAGATTGTGCCCAGCTAGGAGCTCTTGAGTTAGGGAAATGGATACATATTTATGCAGATAAAGCCGGGTTTTTGCGCAACATTTGTGTTTGTAATGCTTTGATCGAAATGTATGCAAAATGTGGAAGTATAGATCAAGGGCGTCGCTTGTTTGATCAGATGAAAGAGAGGGATGTGATATCTTGGAGTACAATGATCGTAGGGCTAGCAAATCATGGAAGAGCTCGTGAAGCTATTGAATTGTTTCAAGAAATGCAGAAGGCAAAGATTGAACCCAGCATCATCACCTTTGTCGGTCTTTTAACAGCTTGTGCCCATGCTGGCCTTTTGAATGAGGGATTGAGGTACTTCGAGTCCATGAAAAGGGATTACAATATAGAACCAGGGGTTGAGCATTATGGTTGTTTGGTCAATCTTCTTGGTCTTTCTGGACGCCTTGATCAGGCTCTTGAACTCGTAAAGAAGATGCCAAGGAAGCCGGATTCACCCATTTGGGGTTCGTTATTGAGTTCCTGCAGAAGTCACGGCAATCTCAAGATTGCAGTCATTGCAATGGAGCATCTGCTAGAGCTTGAACCAGCCGATACAGGGAACTATGTCTTGCTTTCAAATCTTTATGCAGACTTGGGAAAGTGGGATGGTGTATCGAGGATGAGGAAACTCATGAGAAGTAAGAGCATGAAGAAGACACCAGGGTGCAGTTCAATTGAGGTGGACAATATGGTTCAAGAATTTGCATCAGGTGATGATTCAAAACCATTTTCCAAAGCTATATGTAGGGTACTAAAGCTGCTGGTTATGCATCAGAGCAAAATCATCGAAATTATGGTTCATGACATAAGCTAA 1578 0.4176 MEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSKIIEIMVHDIS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0449 525 Gene3D Tetratricopeptide repeat domain 84 255 IPR011990 GO:0005515
Vvi4g0449 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 511 IPR046960 GO:0003723|GO:0009451
Vvi4g0449 525 SUPERFAMILY TPR-like 175 459 IPR011990 GO:0005515
Vvi4g0449 525 Pfam PPR repeat 144 169 IPR002885 -
Vvi4g0449 525 Pfam PPR repeat 172 200 IPR002885 -
Vvi4g0449 525 Pfam PPR repeat 67 93 IPR002885 -
Vvi4g0449 525 Pfam PPR repeat 203 233 IPR002885 -
Vvi4g0449 525 Pfam PPR repeat 376 403 IPR002885 -
Vvi4g0449 525 Pfam E motif 419 481 IPR046848 -
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 304 337 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 274 303 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 172 200 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 144 170 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 339 372 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 67 92 IPR002885 -
Vvi4g0449 525 NCBIfam pentatricopeptide repeat 203 237 IPR002885 -
Vvi4g0449 525 Gene3D Tetratricopeptide repeat domain 256 367 IPR011990 GO:0005515
Vvi4g0449 525 Gene3D Tetratricopeptide repeat domain 368 504 IPR011990 GO:0005515
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Vvi4g0449 525 Pfam PPR repeat family 301 349 IPR002885 -
Vvi4g0449 525 FunFam Pentatricopeptide repeat-containing protein At5g44230 131 256 - -
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Vvi4g0449 525 FunFam Uncharacterized protein 257 354 - -
Vvi4g0449 525 FunFam Uncharacterized protein 355 502 - -
Vvi4g0449 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0449 Vvi-Chr4 4058298 4059875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0449 44 510 Glycoside Hydrolase AT3G49170 34.829 9.00e-96 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0449 - - vvi:100260991 1055.82