Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0448 ATGTCGGAGAGACAGAATGTCCTGGCCTTGCTGTTCATATTATCAGAGCTTCTTCATGTCTGCTCAGGAGATGTTGGCACAGCAGGCCAATATCCGCCTCCTTATCTGCCAACTGCCTGCTACGGCAACGATATGTCTAAGTTCCCATCAAGCAGCTTATTCGCGTCGGCCGGAGATGGGATATGGGACAATGGGGCTGCGTGTGGGAGGCAGTACTTTGTCAAGTGCTTGAGCGCACAAATTCCAGGGATATGCAAAGCTGATCAGATCATCAAAGTGAAGGTAGTGGATAAAGCCTCTAGGAATGGAGAGATCCTTGTTCTTTCTACTATTGCATTTGGGGCTATTGCTAATCCTTCTGCTGTTTGGGTTAACATAGAGTTTGCAGAGGCTTGA 396 0.4798 MSERQNVLALLFILSELLHVCSGDVGTAGQYPPPYLPTACYGNDMSKFPSSSLFASAGDGIWDNGAACGRQYFVKCLSAQIPGICKADQIIKVKVVDKASRNGEILVLSTIAFGAIANPSAVWVNIEFAEA* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0448 131 CDD DPBB_EG45-like 24 128 - -
Vvi4g0448 131 Gene3D - 24 130 IPR036908 -
Vvi4g0448 131 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 131 IPR007112 -
Vvi4g0448 131 Pfam Lytic transglycolase 61 127 IPR009009 -
Vvi4g0448 131 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 8 129 - -
Vvi4g0448 131 SUPERFAMILY Barwin-like endoglucanases 11 129 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0448 Vvi-Chr4 4056576 4057171 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0448 - - vvi:104879013 267.314