Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0446 ATGGTGGATGTGTGTAATCACCATGCAGAAACAGAGTATGCGAATTTGTTATTCAAAAGGGTGGCTGACCCAAATGCTTTCTTGTACAATGCAATGATCAGAGCTTATAAGCATAACAAAGTTTACGTCCTAGCAATCACTGTTTACAAGCAAATGCTAGGACACTCCCATGGTGAAAACCCCATTTTTCCTGACAAATTCACCTTCCCATTTGTTGTTAAATCATGTGCGGGGCTTATGTGTTATGATCTGGGAAAGCAAGTTCATGGGCATGTGTTCAAATTTGGGCAAAAGTCCAATACAGTCGTTGAAAATTCACTTGTGGAAATGTATGTAAAATGTGATAGCTTGGATGATGCCCATAAGGTGTTTGAGGAAATGACTGAAAGAGATGCAGTTTCTTGGAATACCCTCATTTCAGGGCATGTTAGATTAGGGCAGATGAGAAGGGCAAGAGCTATCTTTGAGGAGATGCAGGACAAGACCATTTTTTCTTGGACAGCTATCGTTTCCGGGTATGCTCGAATTGGGTGCTATGCAGATGCATTGGAATTTTTCCGGAGAATGCAAATGGTGGGTATTGAGCCTGATGAGATCAGTCTTGTTTCTGTTTTACCAGCTTGTGCCCAGCTGGGAGCTCTTGAGTTAGGGAAATGGATACATTTTTATGCAGATAAAGCCGGGTTTTTGCGCAACATTTGTGTTTGTAATGCTTTGATCGAAATGTATGCAAAATGTGGAAGTATAGATGAAGGGCGTCGCTTGTTTGATCAGATGAATGAGAGGGATGTGATATCTTGGAGTACGATGATAGTAGGGCTAGCAAATCATGGAAGAGCTCATGAAGCTATTGAATTGTTTCAAGAAATGCAGAAGGCAAAGATTGAACCCAACATCATCACCTTTGTCGGTCTTTTATCAGCTTGTGCCCATGCTGGCCTTTTGAATGAGGGATTGAGGTACTTCGAGTCCATGAAAAGGGATTACAATATAGAACCAGGGGTTGAGCATTATGGTTGTTTGGTCAATCTTCTTGGTCTTTCTGGGCGCCTTGATCAGGCTCTTGAACTCATAAAGAAGATGCCAATGAAGCCGGATTCGGCTATTTGGGGTTCGTTATTGAGTTCCTGCAGAAGTCACAGCAATCTCGAGATTGCAGTCATTGCAATGGAGCATCTGCTAGAGCTTGAACCAGCCGATACAGGGAACTATGTCTTGCTTTCAAATCTTTATGCAGACTTGGGAAAGTGGGATGGTGTATCGAGGATGAGGAAACTCATGAGAAGTAAGAGCATGAAGAAGACACCAGGGTGCAGTTCAATTGAGGTGGACAATATGGTTCAAGAATTTGCATCAGGTGATGATTCAAAACCATTTTCCAAAGCTATATATAGGGTACTAAAGCTGCTGGTTATGCATCAGAGAAGAATGGATGATGATATCATCGAAATTATGGTTCATGACATAAGTTAG 1473 0.4182 MVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRRMDDDIIEIMVHDIS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 28 53 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 235 264 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 105 131 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 133 161 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 265 299 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 164 198 IPR002885 -
Vvi4g0446 490 NCBIfam pentatricopeptide repeat 300 333 IPR002885 -
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 130 IPR002885 -
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 161 IPR002885 -
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 328 IPR002885 -
Vvi4g0446 490 FunFam Uncharacterized protein 316 463 - -
Vvi4g0446 490 Gene3D Tetratricopeptide repeat domain 315 463 IPR011990 GO:0005515
Vvi4g0446 490 SUPERFAMILY TPR-like 111 418 IPR011990 GO:0005515
Vvi4g0446 490 Gene3D Tetratricopeptide repeat domain 91 215 IPR011990 GO:0005515
Vvi4g0446 490 Gene3D Tetratricopeptide repeat domain 216 314 IPR011990 GO:0005515
Vvi4g0446 490 Pfam E motif 380 442 IPR046848 -
Vvi4g0446 490 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 475 IPR046960 GO:0003723|GO:0009451
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi4g0446 490 FunFam Uncharacterized protein 218 315 - -
Vvi4g0446 490 FunFam Pentatricopeptide repeat-containing protein At5g44230 92 217 - -
Vvi4g0446 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 262 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat family 262 310 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat 28 54 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat 133 161 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat 337 362 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat 105 130 IPR002885 -
Vvi4g0446 490 Pfam PPR repeat 164 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0446 Vvi-Chr4 3998912 4000384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0446 5 476 Glycoside Hydrolase AT3G49170 34.672 9.28e-97 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0446 - - vvi:100264715 986.867