Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0421 ATGCCCAAGTCTGTTGCCAAAAGAGTGGAAAAAACACAAAGAGATTTCCTTTGGGGGGGAGGAAACTTGGAAGGAAAAGTTCACCTAGTCAAATGGGATGCGGTCTGTACAGAAAAACACAAGGGAGGGCTGGGATTAAGGAGAATAGCCACTTTGAATAGAGCCTTGTTGGGCAAGTGGATTTGGAGGTTTGCTTGTGAAAAGAATAACTTTTGGAATCAAGTGATCACTACAAAATATGGGCAAGAGGATTATGGTTGGAGGCCAAAGAAGGTCCGTGGGCCGGCTGGAGTAAGGGTCTGGAAGGAGATCATGAAGGAAGACGATTGGTGTTGGGATAATTTGGCATTTAGGGTTGGGAAGGGTTCCAAAATCAAGTTTTGGAAAGATTGTTGGTGCACAGACACTCCGTTGTCCCAATGCTTCAATCAACTCTTTGTCCTTGCCGTGCATAGGGATGCTACGATTGAGGAGATGTGGGATCATGATGCGGGCCAAGGAGATTGGAAGCTTGTTTTTGTGAGGGACTTCAATGATTGGGAGATGGATATGGTTGGGGAGCTGCTTCATACTTTGAGGGGTCAAAGGCCCTCTCTGGAGGATGACTCAGTTGTGTGGAGGCAGGGAAGAAATGGTATTTTCAAAATCAAAGAAGCCTACAGGCTGCTAGACAAGTCTAATGCCACAGTTTTTCCCGCAAGGAAAATATGGGTGGATAGGGTGCCAACAAAAGTCTGTTTTTTTGCTTGGGAGGCTACGTGGGAGAAGGTGCTTACCCTGGATAGACTCCAGTTAAGAGGGGTGCAACTCCCTAATTGCTGCTATTTGTGTGGTTGCGAAGAAGAGAATGCAAATTTTGACTTTCATGGGGAGGATTGGGAGTGGGGAACCTACAAAGCTCAGCGTGTTCAAGCAGTTGGTGAATACAGCAATGATGATGGTTTACACCTTGAGAAAATCTTTATCCAAAATGATAATGCCACAATCCATGCTGATGGGACCTTGTTAGGGCCAAAAACAAATCTTCATTTTGCTGTTTTGAATTTCCCTGTTAGTCTAGTCCCGACACTGGTACAGGTTATTGAATCTTCAGCTACTGATGCTGTTCATTCCCTGCGGCAATTTTTAGCACCAATTAAGGGCATTTTACACATGGAAGGGGATCTCAGAGGAAGTATTGCAAAACCAGAATGCAATGTAGAAGTAAGGCTCCTCGATGGTGCCATTGGGGGTATTGATCTTGGGCGAGCTGAAATTGTAGCTTCCCTAACATCAACCAGTCGCTTTCTTTTCAATGCAAAATTTGAACCCTTTATTCAAAATGGTTATGTTCACATTCAAGGAAGTGTTCCTGTAGCTTTTGTCCAAAATAACATGTTAGAGGAAGAAGATATAGAAACATGGATCCCTGGTTGGGTGAAGGAAAGGGGCAGAGGTCCTGCTGATGATGTCAGTGAGAAGAAAATCTCCAGGGATAGAAATGAAGAAGGTTGGGATACTCAGTTGGCAGAAAGTCTCAAAGGTTTAAACTGGAACATATTAGATGTAGGAGAAGTTAGAATTGATGCAGATATTAAAGATGGAGGCATGATGATGTTAACAGCTTTATCTCCTTATGCTGACTGGCTTCATGGCAATGCTGACATTATGCTTCAGGTCAGAGGTACAGTTGAACAACCGGTGATCAATGGATCTGCTTCTTTCCACAGAGCATCTGTATCATCACCAGTCCTCTGGAAACCACTCACAAACTTTGGTGGCACAGTTCATGTGAAATCAAATAGATTATGCATCAGTTCACTAGAAAGTAGGGTAGGCAGACGGGGAAAGTTGTTTGTAAAAGGGAATCTTCCTCTCAGAATAAGTGAAGCATCACTTGGTGACAAAATTGACTTGAAATGTGAAGTTCTAGAAGTACGGGCAAAAAATATCCTAAGTGGTCAGGTAGACACACAGATGCAAATAACTGGTTCCATATTGCAACCAAATATTTCTGGAAATATTAAATTGAGCCATGGAGAAGCATATCTACCACCTGATAAGGGTACAGGAGCAGCTCCATTTAATAGATTGGCATCAGTCCATCCAAGTGGTGGTTACAATCCAGGAACTGCTTCCAGATATCTTTCATGGTTTCCCAGTTCAGAGCCTGCTCCCTCAAGCACCAAATTCCCTCAACCCTCAGGTAAACAGACTGACGTTGAAAAGGAAATGGAGCAAGTGAATCGTAAGCCAAAAATTGACATCCGCCTCACTGACTTGAAACTTGTTCTGGGACCAGAATTGAGAATACTTTATCCTTTGATTCTTGATTTTGCTGTAAGTGGAGAGCTTGAGCTCAATGGCATAGCTCATCCCAAACTGATAAAACCAAAGGGCGTTTTAACATTTGAGAGTGGTGAAGTTAATCTTGTTGCAACCCAGGTGAGGCTTAAGAAAGAGCATCTTAATATTGCAAAATTTGAGCCTGATAATGGGCTGGATCCAACGCTAGACTTAGCTTTGGTTGGATCAGAGTGGCAATTCAGGATCCAAAGTCGAGCCAGTAATTGGCAGGATAATTTGGTTGTGACTTCAACACGTGCTGTGGAACAGGAAGTCCTCTCACCTACTGAGGCTGCCAGAGTCTTTGAGAGTCAATTGGCAGAGTCCATTTTGGAAGGTGATGGCAAGCTTTCATTCAAAAAGCTAGCGACTGCAACACTTGAGACGTTAATGCCAAGAATTGAAGGGAAGGGAGAGTTCGGACAGGCTAGGTGGAGAATAGTATATGCACCACAGATCTTCAGCTTGCTTTCAGTTGATCCTACTGTTGATCCTCTCAAGTCTCTGGCCAGTAATATTTCCTTTGGTACAGAAGTCGAAATCAAGCTTGGGAAACGCCTTCAGGCTTCCATTGTTAGGCAGATGAAGGATTCAGAGATGGCAATGCAATTTACCTTGACCTACCAGCTCACAAGCCGCCTGCGAGTGCTCCTACAATCTTGGTCTGTTTCATCCCAACGCCTCCTATTCGAATATTCTTCTACCTCACAGAACTAA 3042 0.4369 MPKSVAKRVEKTQRDFLWGGGNLEGKVHLVKWDAVCTEKHKGGLGLRRIATLNRALLGKWIWRFACEKNNFWNQVITTKYGQEDYGWRPKKVRGPAGVRVWKEIMKEDDWCWDNLAFRVGKGSKIKFWKDCWCTDTPLSQCFNQLFVLAVHRDATIEEMWDHDAGQGDWKLVFVRDFNDWEMDMVGELLHTLRGQRPSLEDDSVVWRQGRNGIFKIKEAYRLLDKSNATVFPARKIWVDRVPTKVCFFAWEATWEKVLTLDRLQLRGVQLPNCCYLCGCEEENANFDFHGEDWEWGTYKAQRVQAVGEYSNDDGLHLEKIFIQNDNATIHADGTLLGPKTNLHFAVLNFPVSLVPTLVQVIESSATDAVHSLRQFLAPIKGILHMEGDLRGSIAKPECNVEVRLLDGAIGGIDLGRAEIVASLTSTSRFLFNAKFEPFIQNGYVHIQGSVPVAFVQNNMLEEEDIETWIPGWVKERGRGPADDVSEKKISRDRNEEGWDTQLAESLKGLNWNILDVGEVRIDADIKDGGMMMLTALSPYADWLHGNADIMLQVRGTVEQPVINGSASFHRASVSSPVLWKPLTNFGGTVHVKSNRLCISSLESRVGRRGKLFVKGNLPLRISEASLGDKIDLKCEVLEVRAKNILSGQVDTQMQITGSILQPNISGNIKLSHGEAYLPPDKGTGAAPFNRLASVHPSGGYNPGTASRYLSWFPSSEPAPSSTKFPQPSGKQTDVEKEMEQVNRKPKIDIRLTDLKLVLGPELRILYPLILDFAVSGELELNGIAHPKLIKPKGVLTFESGEVNLVATQVRLKKEHLNIAKFEPDNGLDPTLDLALVGSEWQFRIQSRASNWQDNLVVTSTRAVEQEVLSPTEAARVFESQLAESILEGDGKLSFKKLATATLETLMPRIEGKGEFGQARWRIVYAPQIFSLLSVDPTVDPLKSLASNISFGTEVEIKLGKRLQASIVRQMKDSEMAMQFTLTYQLTSRLRVLLQSWSVSSQRLLFEYSSTSQN* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0421 1013 Pfam TamB, inner membrane protein subunit of TAM complex 602 995 IPR007452 GO:0005886|GO:0009306
Vvi4g0421 1013 Pfam zinc-binding in reverse transcriptase 214 284 IPR026960 -
Vvi4g0421 1013 PANTHER EMBRYO DEFECTIVE 2410 283 1012 - -
Vvi4g0421 1013 MobiDBLite consensus disorder prediction 717 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0421 Vvi-Chr4 3696127 3702954 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0421 - - vvi:100247424 1442.56