Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0418 ATGAGAAATTGCAATGTGACCAAGTTTATCCGACGAAAAGATAATCACACGTGTCAAATCCAGACTCTTCGTGAAACCCTGCTCCGTTTTTGCCACGTACGCGTTCACTCTTCTAGGGTTTATATTGCCATCGTCCGATTCCAGACTCAGACTCCAACCCTAATCTCAGACACAGCCGACTCGCTTCTTCTTCATTTTTCCCTGCATTCTCCGCCTCTGTCTTCCACCGCCTCCGATCAGCAGTTATCACTACCAAACCAGCAAATGGCACAGCTGGAACCCACTTCCAACAACTTGGACTCGTCAATGCCCAACATGCAAATGGGACAAATCAGAACCTTGCCCAATGACCATGGATTACAGCATCTATCAGTATCAAGCAAGCAAATGGAACTGTTGGAGCCTATATCTTGTACTCATATGCCTCCAATGATACCTGTATCAAGTAAGCAACTGGGGCAGATGGAACCAAGGGCTAATAATCTGGTGGCACAACAGTCTTTAATGCCAAACAGGCAACTGGAAGTGGTGGATTCAAATTCGAATAATTTTGGATTACAGCAGTCTTCAACACCTAATAAACGGAAGGTACCAATGGAACCTATATCTAATAGTCCTGGAGCACAGCAGATATCAATGCCTAACAAGCGGGTGGCACAAATGGAGCATAGACCATGGTTACAGCAATTATTTGTTCCCAATAAAAAAATACCAGTGCAGGTTGCACCCAACACTCCAGGTTCACAGCATTTAACAGTACCGAATAAGAAAATGGTGCGTACAGATTCCATGTCTCGTAAATCTGCCCCTCAGCAAGTAGTAACTCCAAAAGGTCAAACCACCCAGATGCAACCATCTCCCAAGGTTCGATCGGAGTCATTTGAATCTGTGAGGACTAAGCTGAGGGAATCATTAGCTGATGCATTGGCCTTGGTTTACCAGCAGCAAGATAAACCTCCACATATGGAAAAGAATTCTAAAAATGAGGCTACAAATACGAGCATTCCAAGGCAGTCACAGGAGGACTCTGAGCCTGCTGAATCTGCTTCTACTGCTGTTAATATTGTTGACCAGGTTTCTGAAAAGCCTAGTGAGACTTTGCCATCCAAAGAAGATTGTTCTGCTCAGAAGTGCAATGATGGTCAAAGTGCTTCCCAGGAGACTCTTACTAATGAAAACAATGGGGATTATGCGCAGAACTGGAAGTATGACAGGCAAGAATTCCAATTGAATACTGTGTTGCCTGATGCGGAAAGTTCTTTTAGTGACAACTTCTTTGTCAAAGATGAGCTTCTGCAGGGAAATGGGCTCTCTTGGGCACTGGATCTAGACACGGAGGTTCCAGAACCAAAGGAAATTTCCACTGCCAAAAATGAAAATTTGGATGGTAAAGAGGTTGTAAATGAGGGGCAAAAAACAGTTCAATCTCCACAAACTTTGGCATTTGAAATTGAAGCAGAACTCTTTAAATTATTTGGAGGTGTGAATAAGAAATATAAAGAAAAGGGTAGGTCTCTTTTGTTCAATCTAAAAGATCGTAATAATCCAGAACTGAGAGAAAGAGTTGTGGCTGGTGAAATTTCCCCAGAACGGTTATGTTCTATGACTGCAGAGGAACTTGCTTCGAAAGAGCTGTCTGAGTGGCGAATAGCAAAAGCAGAAGAGCTTGCCCAAATGGTAGTTTTGCCTGATTCAGAAGTAGATATCAGGCGATTAGTGAGGAAAACACATAAGGGTGAGTTCCAAGTAGAGTTTGAGCAGGATGATGGTGCCTCAGTGGAGGTTTCTGTTGGAACAAGTTCACTTACTCGAGTCAGACCAAGAACCAAAGAGAAGGAAGCTCGTCGTCCCTCTGAACCTGATGGAACCAAAAGCAAAACAAATCTTATAGAGGAAAAAGGTAGTTTAGATCAGCCGGATACTCCTTGTAGCCTTACTATTCTTCCAAATGAAGACCCTGATTTGATGCAAGGGCTGATGGGGGATGAATTTAAGGATGAAGAATTTCTTCCTCCAATTGTCTCTCTGGATGAATTCATGCAGTCTCTTGACTCTGAGCCACCATTTGAAAATTTACCGGTGGATGCTGAGAAAGTGACACCTGCCTCGGGCAAGGACAACTCAGGGGTTAATGTATCTCCAAAGGGCCCTGATAGTACACTAAACAAGCCTGATAAAATGCATGAAAAAGATGCAAAATCTGATGCTAATGAGAAACCTAATGATGGTCACGTACAATCAGAAACCTCCCTGCCAGGTGGTACATCTAAGAGTAATGAGAAATCAAGTCACGTTCATATGCAATCAGAAAGTGCCCCTCATGTTGACCAAAAGAAGGGTGATTATGTCTGGGAAGGCTTACTTCAGTTGAATGTCTCATCCATGGCCACAGTTGTTTGTTTCTTTAAAAGTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATGTCTCGAAGTCGTGCCACCATGGTTGTCCGTTTTGCTTGGAAGGAGGGATCCTCAGAGGATGGGCGTGCAAACCTTTGCGAGGTGGCTGATTCATATGTTTTGGATGAGAGAGTGGGGTTTGCTGAGCCAGCACCTGGCATGGAACTCTACTTTTGCCCACCTCACACAAGAACTCTGGAAATGATCAGCAAACACCTTTACAAGGACCAGACTGAGACACTTAATTCTACTGATAATGGCCTAATTGGTGTTGTTGTATGGAGAAAAGCTCAATTAACTTCAACAATATCACCAAACTCATCTTCACTGCATAAACACGGCACAAAGAAACAACACTTTTCAACTAGGAGACACCATGAAAAAGATGCTAATATGAACTCCAATTTCACATCCAAGCCCTCACACCCTCTGGGCTCTGCTCCCAACATACCTGAACCCTCAACCGATGATGATGATGACATTCCTCCTGGGTTTGGCCCTGCGGCTTCCCGGGATGAAGATGACCTGCCTGAATTCCAATTTTCGGGTGGCTCAAACTCATCAACTGCGCCTTTCTCTGCCCGAACCACCCCTGGGGGCCCAGGAGTGGCCCCCTTTAATCAGCCTCCCCATAACTCACCCCGCCCTGTAGAACAGATGAGACAGCTGATCCAAAAATATGGGCAAAGTGGAGCCCAACCAAGTTCAGGGAACTGGCGGGACAAAGGCAGAATAATAGGGCATGTGACTCAGCCATGGGCTGATGATGACGACGATGATATACCAGAATGGCAGCCACAAGCCCCCCAACAGCAGCTCCAGCCCCCACAACCAACACCTCCAGTTTATGGTTTTCAGGCGCAGCCGGTGCTGCCCACCCATATGCAACAGCATTTGGGAGCAGCACAGCCCCAGCAGCCACTGGGACCATTACCAACCCCTCTGTCAATGACTCTGCAGTCCCTGCAATCATCAGTGAATCTGGTACAAGCCCCACAAAACCCTCCTACCCCTTCATGGCAGCAGCAGCAGCAGCAGGGTTCTTGGTGGGTTCCCCCATCTGGTCCCCAAGGCCTTCCCTCTGTCCAGGGAAATGCTCCTTATCCCGGTACTGGGCAGACCGGGATAAACTGGAGGCAGGATGTACCTAGAAGCAGAGGGTTTTAA 3657 0.4586 MRNCNVTKFIRRKDNHTCQIQTLRETLLRFCHVRVHSSRVYIAIVRFQTQTPTLISDTADSLLLHFSLHSPPLSSTASDQQLSLPNQQMAQLEPTSNNLDSSMPNMQMGQIRTLPNDHGLQHLSVSSKQMELLEPISCTHMPPMIPVSSKQLGQMEPRANNLVAQQSLMPNRQLEVVDSNSNNFGLQQSSTPNKRKVPMEPISNSPGAQQISMPNKRVAQMEHRPWLQQLFVPNKKIPVQVAPNTPGSQHLTVPNKKMVRTDSMSRKSAPQQVVTPKGQTTQMQPSPKVRSESFESVRTKLRESLADALALVYQQQDKPPHMEKNSKNEATNTSIPRQSQEDSEPAESASTAVNIVDQVSEKPSETLPSKEDCSAQKCNDGQSASQETLTNENNGDYAQNWKYDRQEFQLNTVLPDAESSFSDNFFVKDELLQGNGLSWALDLDTEVPEPKEISTAKNENLDGKEVVNEGQKTVQSPQTLAFEIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVVAGEISPERLCSMTAEELASKELSEWRIAKAEELAQMVVLPDSEVDIRRLVRKTHKGEFQVEFEQDDGASVEVSVGTSSLTRVRPRTKEKEARRPSEPDGTKSKTNLIEEKGSLDQPDTPCSLTILPNEDPDLMQGLMGDEFKDEEFLPPIVSLDEFMQSLDSEPPFENLPVDAEKVTPASGKDNSGVNVSPKGPDSTLNKPDKMHEKDAKSDANEKPNDGHVQSETSLPGGTSKSNEKSSHVHMQSESAPHVDQKKGDYVWEGLLQLNVSSMATVVCFFKSGEKASTKEWPGFLEIKGRVRLDAFEKFLQELPMSRSRATMVVRFAWKEGSSEDGRANLCEVADSYVLDERVGFAEPAPGMELYFCPPHTRTLEMISKHLYKDQTETLNSTDNGLIGVVVWRKAQLTSTISPNSSSLHKHGTKKQHFSTRRHHEKDANMNSNFTSKPSHPLGSAPNIPEPSTDDDDDIPPGFGPAASRDEDDLPEFQFSGGSNSSTAPFSARTTPGGPGVAPFNQPPHNSPRPVEQMRQLIQKYGQSGAQPSSGNWRDKGRIIGHVTQPWADDDDDDIPEWQPQAPQQQLQPPQPTPPVYGFQAQPVLPTHMQQHLGAAQPQQPLGPLPTPLSMTLQSLQSSVNLVQAPQNPPTPSWQQQQQQGSWWVPPSGPQGLPSVQGNAPYPGTGQTGINWRQDVPRSRGF* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 326 396 - -
Vvi4g0418 1218 CDD SPOC_TFIIS 783 924 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 721 742 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 1099 1115 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 596 664 - -
Vvi4g0418 1218 ProSiteProfiles TFIIS central domain profile. 456 568 IPR003618 GO:0006351
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 698 776 - -
Vvi4g0418 1218 Pfam SPOC domain 777 924 IPR012921 -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 242 298 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 743 770 - -
Vvi4g0418 1218 Gene3D - 455 543 IPR036575 GO:0006351
Vvi4g0418 1218 SUPERFAMILY Elongation factor TFIIS domain 2 473 544 IPR036575 GO:0006351
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 186 211 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 1010 1025 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 933 1218 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 605 633 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 242 292 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 704 718 - -
Vvi4g0418 1218 SMART mid_6 430 551 IPR003618 GO:0006351
Vvi4g0418 1218 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 168 1014 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 315 396 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 1043 1067 - -
Vvi4g0418 1218 MobiDBLite consensus disorder prediction 1142 1210 - -
Vvi4g0418 1218 Pfam Transcription factor S-II (TFIIS), central domain 462 556 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0418 Vvi-Chr4 3672493 3680199 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0418 - - vvi:100267937 2228.37