Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0416 ATGCTGAAGCAAATTCTCAGTAGGTTGCCACGGAAGGCATTGAAAGCCGAATCCGGTGACTTGGTGCGAACCGACACCGGCACGCCACGGTCGAGCAGTGGGAGCCCGGGGTCTCGACCAACCAGTGCAAAGAAGACATCTTCGGTTTTTCCGACAAATGCTGTAGCTGGAGTTGAGCCCTCAGCGGCATTCAACGATGTGCCAATTGCAGAGAAATTGAATCTTTTTGTGAGTAAATTGAATCTTTGCTGCACAGTTTTCGATTTCAATGACCCAAGTAAGAATTCTATAGAGAAGGACGTCAAACGTCAAACGTTGATAGAACTTGTTGATTTTATGGTTTCGGGGCCTCCTAGGTTTACGGAACCTGTGATTGCCGCAATGTGTAAAATGTGTGCTACTAACCTTTTTAGGGTTTTCCCCCCTAATTATCGATCTAATTCTCTTGGTGGTGAGAATGATGATGACGAACCAACATTCGATCCGGCGTGGTCGCATTTACAACTTGTGTATGATTTATTGCTTAAATTTGTTACTTCATCGTGTCTGGATGCGAAGGTAGCCAAAAAGTATATAGACCATTCATTTGTCTTGAGGTTGCTCGACCTGTTTGATACCGAGGACCCAAGAGAAAGAGAATGTTTGAAAACTGTTCTGCATAGGATTTATGGCAAGTTCATGGTTCACAGGCCTTTTATCAGGAAGTCCATGAGCAATATATTCTATCGTTTTGTGTTTGAGACAGAACGAAATAATGGTATTGCTGAGATGCTGGAGATTTTTGGGAGTGTAATTAGTGGGTTTGCATTACCTCTGAAGGAGGAGCACAAGATCTTCCTGTGGAGAGCTTTGATTCCTCTGCACAAGCCAAAATCTGTGGGAGTTTATTTTCAGCAATTGTCCTACTGTGTTACACAATTTATAGAGAAGGAGCCAAAGTTAGCCAGCAGCGTGATAAAGGGTTTGTTGAGATACTGGCCAATAACAAATAGCCAGAAGGAAGTAATGTTTCTGGGTGAGTTAGAAGAGATACTAGAAGCAATTAACATGGTGGAATTCCAAAAGATCATGGTTCCATTATTCTGGCGGATTGGATGCTGCATCAACAGTTTCCATTTTCAGGTGGCCGAAAGGGCCCTTTTCTTATGGAACAATGATCAGATTGTAAACCTGATTGCACATAACCGACAAGTTCTCATTCCAGTTATATTCCCGGCTTTAGAAAGAAATGCCCAAAGCCATTGGAATCAAGCAGTGCTCAACTTATCTCTAAATGTGAGAAAGATGTTATCAGAGATGGATGATGAACTATTCTTAGCCTGCCATGCCCGGTTTAAGGAGGAAGAAAGCAGGCTAAACCTGGAAGCACAAAAGCGGAAGGAGACATGGGAGCAACTAGAGAATGAAGCCAGCCTTCAGCCAGTGAGTGGAAACACTGCTGTTCTAGTAACTCCTTTAGCAACCTCGATTACTTGTTAA 1479 0.4307 MLKQILSRLPRKALKAESGDLVRTDTGTPRSSSGSPGSRPTSAKKTSSVFPTNAVAGVEPSAAFNDVPIAEKLNLFVSKLNLCCTVFDFNDPSKNSIEKDVKRQTLIELVDFMVSGPPRFTEPVIAAMCKMCATNLFRVFPPNYRSNSLGGENDDDEPTFDPAWSHLQLVYDLLLKFVTSSCLDAKVAKKYIDHSFVLRLLDLFDTEDPRERECLKTVLHRIYGKFMVHRPFIRKSMSNIFYRFVFETERNNGIAEMLEIFGSVISGFALPLKEEHKIFLWRALIPLHKPKSVGVYFQQLSYCVTQFIEKEPKLASSVIKGLLRYWPITNSQKEVMFLGELEEILEAINMVEFQKIMVPLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVLIPVIFPALERNAQSHWNQAVLNLSLNVRKMLSEMDDELFLACHARFKEEESRLNLEAQKRKETWEQLENEASLQPVSGNTAVLVTPLATSITC* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0416 492 SUPERFAMILY ARM repeat 74 465 IPR016024 -
Vvi4g0416 492 PIRSF PP2A_B56 12 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi4g0416 492 MobiDBLite consensus disorder prediction 1 49 - -
Vvi4g0416 492 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 68 469 - -
Vvi4g0416 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 63 470 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi4g0416 492 Gene3D - 68 469 IPR011989 -
Vvi4g0416 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 472 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi4g0416 492 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0416 Vvi-Chr4 3643214 3646296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0416 K11584 - vvi:100250858 974.156