Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0412 ATGAATAGCTTTTCTTCTTTAGACACTGTTTATGCGAGCCCCAACAGTGGAAATGGAGATTGTGATGACAAGGCTCTTCGTTGGGCTTCATTGCAGAGGATTCCGACCTATTCTAGAGCTCGGAGGTCGTTGTTTCGGAACATTTCTGGGGAATTATCGGAGGTTGAACTGTGTAAGCTCGACGTTTATGAGCGCAGGCTCGTGGTGGATCGGTTGGTTAGGGCTGTCACCGAAGACCCAGAGCTGTTTTTTGATAAAATTAGAAGGAGATTTAAAGATGTTGGTCTGGAATTTCCAAAAGTCGAAGTTCGATTTGAGCACCTGAAGGTCAATTCTTTTGTTCATGTCGGAAGCAGAGCACTGCCTACAATCCCCAATTTCATTTTCAACACGACTGAGGCTTTCTTGAGGCAGTTGAGGATTTTCCCTGGAGAAAGGAAGAAGCTATCAATTTTAGACGACATTAGTGGTGTTATTAGACCTTCAAGATTGACATTGCTTTTGGGTCCTCCGAGCTCTGGAAAGACAACATTGCTTTTGGCACTTGCTGGGAGACTTGGAACTGGTCTGCAGATGTCAGGGAGAATCACATACAACGGACACGAGCTTAGGGAGTTTGTTCCGCAAAGAACTTCAGCTTATGTAAGTCAGCAGGACTGGCACGTTGCAGAAATGACAGTCAAGGAGACTCTTCAGTTCTCGAGACGTTGTCAAGGTGTTGGATTCAAATATGATATGCTTTTGGAACTTCTAAGAAGAGAGGAGAATGCTGGGATAAAACCTGATGAAGATCTAGATATATTTATCAAGGCATTAGCACTGGGGGAACAGAAAACAAGCCTTGTTACTGAGTATATTATGAAGATTTTAGGATTGGACCCTTGTGCGGACACATTGGTGGGAGATGAAATGCTCAAAGGGATCTCTGGGGGTGAAAAGAAGCGGCTTTCTACAGGTGAAATGTTAGTGGGTGCATCTACAGTATTGTTCATGGATGAGATATCAACCGGGCTTGATAGTTCAACTACGCATCAAATTATCAAGTACCTTAGGCATTCAACTCAAGCACTTAATGGGACAACAGTCATATCTCTCTTGCAACCAGATCCTGAGACTTATGAGCTGTTTGATGATATCATTCTTTTGGCGGAAGGTCAGATTGTGTACCAGGGACCAAGCAAGGCTGCTCTTGAGTTCTTTGAACTTATGGGGTTTCAGTGTCCAGATAGGAAAAATGTGGCTGATTTTTTGCAAGAAGTCATATCAGAAAAAGATCAAGAACAGTATTGGTCCTTTCCTGATCGCCATTACCAATATGTACCTGTGGCAAAGCTTGCAGAAGCTTTTCGATCATTTCATGCCAGAAAATCTTTGTTCCAGTTGCTGGCTGTACCTATTGATGGATGCTGTAGTCACCCTGCAGCGCTCTCAACATTTACTTATGGTGTGAAGAGGGCTGAGCTTCTCAAGATGAGTTTCTCCTGGCAAATGCTGCTGATGAAACGTAATTCATTCATCTATATTTTCAAATTCACGCAGCTTCTTTTTGTTGTTGTGATCATGGTGACTGTATTTTTTCGAACAACCATGCATCATAATACACTTGATGATGGCGGTGTTTATCTTGGTGCCCTCTACTTTGCAATAGTTATGATTCTCTTCAATGGCTTTACGGAGGTCCCAATGTTAGTAGCCAAGCTTCCAGTTCTCTACAAGCATAGAGACTTGCGCTTCTATCCATGCTGGGTCTATACAATTCCTTCTTGGTTTTTGAGTATTCCATCTTCAATTCTAGAGTCCTGCATATGGGTGGCAGTTACTTATTATGTGGTTGGATTTGATCCTCAAATAACCAGATGCCTTAAGCAGGCTTTGTTATATTTCTCTTTGCACCAGATGTCTATTTCTCTTTTCCGCATCATGGCATCCTTGGGACGAAATATGATAGTTGCTAACACCTTTGGATCTTTTGCAATGTTGGTGGTCATGGCTCTGGGAGGATTTATCCTTTCAAGAGATAGCATTCCCAATTGGTGGATTTGGGGTTATTGGTTTTCCCCTTTGATGTATGCTCAAAATGCGGCTTCTGTGAATGAATTCCTTGGCCATTCTTGGGACAAGAGAGCTGGGAACCACACTACATTTTCTTTAGGGGAGGCATTATTGAGAGGCCGCAGTTTATTTCCAGAGAGCTACTGGTACTGGATTGGTGTGGGTGCTTTGCTTGGCTACGCAATTTTGTTCAACATCCTGTTCACACTCTTCTTGACTTACCTGAACCCCCTTGGGAGGCGACAAGTTGTTGTTTCTAAAGAAAAGCCTCTCAATGAAGAGAAGACAAACGGCAAACATGCTGTCATTGAGCTAGGAGAATTTTTGAAGCATTCACACTCATTTACTGGCAGAGACATTAAAGAACGCAGAGGCATGGTCCTTCCATTTCAACCGCTCTCCATGTCCTTCCACGACATTAATTATTATGTGGATGTCCCAGCGGAACTGAAACAGCAGGGTGCACTGGAAGACCGATTACAGTTGCTAGTTAATGTTACTGGAGCATTTAGGCCAGGCGTGCTTACTGCATTAGTTGGAGTCAGTGGTGCTGGTAAAACTACCCTCATGGATGTTTTAGCTGGTAGAAAAACAGGGGGGGTTATTGAAGGGAGCATACGTATTTCTGGTTATCCCAAAAGGCAAGAGACCTTTGCAAGGATTTCCGGCTATTGTGAGCAGAGTGATGTTCATTCTCCATTCTTGACTGTCCATGAATCACTTCTATTCTCTGCCTGTCTCCGGCTACCTTCCCATGTTGACTTGAAAACACAGAAGGCTTTTGTTAGTGAGGTTATGGAGCTTGTTGAGCTCACTCCTTTAAGTGGAGCTTTAGTTGGTCTACCTGGGGTTGATGGATTGTCCACAGAGCAAAGAAAAAGGCTGACCATTGCTGTTGAGCTTGTTGCCAACCCTTCTATTGTGTTCATGGATGAACCCACTTCAGGACTGGATGCCAGGTCTGCTGCCATTGTTATGAGAACTGTGAGGAATATCGTCAACACTGGGCGGACTATTGTTTGCACAATCCATCAGCCAAGCATAGATATCTTTGAGTCTTTTGATGAGCTTTTATTTATGAAGAAAGGAGGGAAGCTCATTTATGCTGGTCCTCTAGGCGCCAAGTCTCACAAACTTGTTGAGTTTTTTGAGGCCATTGAAGGAGTCCCGAAGATCATGCCTGGCTACAACCCTGCTACATGGATGCTTGAGGTCACTACTTCTACAGAAGAAGCTCGTCTTGGTCTGGATTTTGCAGAAGTTTATAAAAGATCAAATCTATTCCAGCAAAATAAAACACTGGTTGAAAGACTAAGCATACCAAACTGGGATTCAAAGGATTTAAGCTTCCCAACCAAATATTCTCAGTCATTCTTTTCCCAGCTTCTGGACTGTCTTTGGAAGCAAAATCTGTCTTATTGGCGGAATCCACAATACACTGCTGTCCGCTTCTTCTACACTGTTATCATATCATTGATGTTTGGAACGATATGCTGGAAATTCGGTTCTAAAAGGGAGACACAGCAGGACATTTTTAATGCTATGGGATCCATGTATGCAGCAGTCTTATTTATAGGAATCACAAATGCCACTGCAGTGCAGCCTGTTGTTTATGTTGAAAGGTCTGTTTCATGCAGAGAAAGAGCAGCAGGGATGTATTCTGCTCTGCCATTTGCCTTTGCCCAGGTTTTGGTTGAATTGCCTTATGTGTTTGTACAGTCACTTATCTACAGCAGTATGTTCTACTCCATGGCCTCATTTGAATGGAACCTGACGAAGTTCCTTTGGTACTCATGCTTTATGTATTTCACTTTACTGTACTTCACCTTCTTTGGAATGATGACCATTGCTGTTACACCCAATCATAATGTTGCTGCAATCATCGCTGCTCCGTTTTATATGATGTGGAACCTTTTCAGTGGATTCATGATTGTTCGCAGGAGAATCCCCATATGGTGGAGATGGTATTATTGGGCAAATCCAATAGCCTGGACTTTGTATGGGCTTCTGACGTCCCAATATGGAGACATGAAAAACCAAGTGAAGCTCTCAGATGGGGTGCGGTCCGTGTCAATAAAACAGTTACTTGAGGATGAGTTTGGTTACAAACATGATTTCTTGGAGAAAGCTGGTTTGGTGGTGGTTTGTTTTTGCATAGTCTTTGCAGTCACTTTTGCTTTTGCAATCAAATCCTTCAACTTCCAAAGGAGATAG 4266 0.4297 MNSFSSLDTVYASPNSGNGDCDDKALRWASLQRIPTYSRARRSLFRNISGELSEVELCKLDVYERRLVVDRLVRAVTEDPELFFDKIRRRFKDVGLEFPKVEVRFEHLKVNSFVHVGSRALPTIPNFIFNTTEAFLRQLRIFPGERKKLSILDDISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTGLQMSGRITYNGHELREFVPQRTSAYVSQQDWHVAEMTVKETLQFSRRCQGVGFKYDMLLELLRREENAGIKPDEDLDIFIKALALGEQKTSLVTEYIMKILGLDPCADTLVGDEMLKGISGGEKKRLSTGEMLVGASTVLFMDEISTGLDSSTTHQIIKYLRHSTQALNGTTVISLLQPDPETYELFDDIILLAEGQIVYQGPSKAALEFFELMGFQCPDRKNVADFLQEVISEKDQEQYWSFPDRHYQYVPVAKLAEAFRSFHARKSLFQLLAVPIDGCCSHPAALSTFTYGVKRAELLKMSFSWQMLLMKRNSFIYIFKFTQLLFVVVIMVTVFFRTTMHHNTLDDGGVYLGALYFAIVMILFNGFTEVPMLVAKLPVLYKHRDLRFYPCWVYTIPSWFLSIPSSILESCIWVAVTYYVVGFDPQITRCLKQALLYFSLHQMSISLFRIMASLGRNMIVANTFGSFAMLVVMALGGFILSRDSIPNWWIWGYWFSPLMYAQNAASVNEFLGHSWDKRAGNHTTFSLGEALLRGRSLFPESYWYWIGVGALLGYAILFNILFTLFLTYLNPLGRRQVVVSKEKPLNEEKTNGKHAVIELGEFLKHSHSFTGRDIKERRGMVLPFQPLSMSFHDINYYVDVPAELKQQGALEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIRISGYPKRQETFARISGYCEQSDVHSPFLTVHESLLFSACLRLPSHVDLKTQKAFVSEVMELVELTPLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKKGGKLIYAGPLGAKSHKLVEFFEAIEGVPKIMPGYNPATWMLEVTTSTEEARLGLDFAEVYKRSNLFQQNKTLVERLSIPNWDSKDLSFPTKYSQSFFSQLLDCLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSKRETQQDIFNAMGSMYAAVLFIGITNATAVQPVVYVERSVSCRERAAGMYSALPFAFAQVLVELPYVFVQSLIYSSMFYSMASFEWNLTKFLWYSCFMYFTLLYFTFFGMMTIAVTPNHNVAAIIAAPFYMMWNLFSGFMIVRRRIPIWWRWYYWANPIAWTLYGLLTSQYGDMKNQVKLSDGVRSVSIKQLLEDEFGYKHDFLEKAGLVVVCFCIVFAVTFAFAIKSFNFQRR* 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0412 1421 CDD ABCG_PDR_domain2 816 1054 IPR034003 -
Vvi4g0412 1421 Gene3D - 836 1066 IPR027417 -
Vvi4g0412 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1055 IPR027417 -
Vvi4g0412 1421 Pfam ABC-2 type transporter 367 422 IPR043926 GO:0140359
Vvi4g0412 1421 FunFam ABC transporter G family member 34 833 1065 - -
Vvi4g0412 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 409 IPR027417 -
Vvi4g0412 1421 FunFam ABC transporter G family member 34 139 443 - -
Vvi4g0412 1421 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 19 1421 - -
Vvi4g0412 1421 Pfam ABC transporter 152 334 IPR003439 GO:0005524
Vvi4g0412 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 819 1071 IPR003439 GO:0005524
Vvi4g0412 1421 Gene3D - 137 438 IPR027417 -
Vvi4g0412 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 136 409 IPR003439 GO:0005524
Vvi4g0412 1421 Pfam Plant PDR ABC transporter associated 705 769 IPR013581 -
Vvi4g0412 1421 Pfam ABC-2 type transporter 491 700 IPR013525 GO:0016020|GO:0140359
Vvi4g0412 1421 Pfam ABC-2 type transporter 1145 1357 IPR013525 GO:0016020|GO:0140359
Vvi4g0412 1421 Pfam ABC-transporter N-terminal 78 127 IPR029481 -
Vvi4g0412 1421 SMART AAA_5 161 393 IPR003593 GO:0016887
Vvi4g0412 1421 SMART AAA_5 856 1048 IPR003593 GO:0016887
Vvi4g0412 1421 Pfam ABC transporter 848 999 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0412 Vvi-Chr4 3596683 3605452 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0412 K08711 - vvi:100255917 2808.09