Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0411 ATGGCAGCATTAGCTCTTGTGTTCTCCCCATGGACTGCTATCTACTCTCAACCTTCCGAGTACGTTCATCTAGCTCAACATGAGTTGCAGGAGTTTGTGTGGAAGGAGAGAAGTTTATTGGGTAAATTGTTCGGAAAGAAAAGCGTTCTAACTGTAAACGATATGATCGACAAATGGAACTTAGATAATAGCGTGATCGTAAAATGCTTAGGGGATGAATTTTATTTATTTTCATTCCCTTTGGAAAGCGATTTCATAAAGGTTTGGTCCCAAGGAACTGTGTTTGCGGAAGGACTGTGTCTTGCGGTGAGAAGATGGTGTCCGGGATTAGAATTAGACTCCAAGAGTATGTCGTATACTCAAATGTGGATGAAACTTCCGGATCTTGATCGTTGCTACTGGACCAATGAGGTTTTGTCCATGATGGCTTCTTCAGCCGGCCAGCCAATAGCTATTGATACTTCTAGTAGTGATGAAGCCCGAGTCTGTATTGAGGTTGACGTCAACGAACCACTGGTGACGGGAGTGCATGTGGATGATGGAGAGGGAGGATTCTGGCAGAGTTTCCGCTACGAGATTCCGGGGTTGTGCTTCCACTGTGGAAGAATTGGCCACAAGAGCGAATATTGTCCACATCCACGTCGGAGAAACATGCAAACCTATGGAAGTCACAACTTGGCTCCTAGAAGAGAACATGGGCTTCGACCCCTTCGGTATTTTTCATGGCATCGTCCGGGTGCTGGGTGGGTGAAGTTGAACTTTGACGGCTCATTCAAAGGGAGGACAGGGAGAGCGGGAGGTGGAGGCTTACTAAGAGACGCACAAGGCTCCTTCATCGCTGCTTTTGCCACACCATTGGACACAAGCAACTCATTGATGGCCGAGATTGGGGCACTTGAAGGTGGGCTCAGGTTGGCTTTGAAGTTGAATGTGGAGCGGATTTTGATTGAAGGCGACTCTAAGATTACAATAGAGATGTTAAGCGGGAAGCGGGAAGCCACAGGGGAAGAAGAGAAGTCCCTTATGACTCATATCCGTGAACTTCTGCAAGGCTTCCAAGAAGTTACTGCTCGCCATGAATTCAGGGAAGCAAACAGGCCGGCTGACCACCTAGCAAATATAGCAACACAAGCACATGAGCCTATGGAGTGGCACCCCCACCCTCCTCATTCCTTGCTTCCTTTTCTTCATCACGACCAATTCAGCAGGGTAGTTCCTAGACTTGTTTTGTAA 1233 0.4745 MAALALVFSPWTAIYSQPSEYVHLAQHELQEFVWKERSLLGKLFGKKSVLTVNDMIDKWNLDNSVIVKCLGDEFYLFSFPLESDFIKVWSQGTVFAEGLCLAVRRWCPGLELDSKSMSYTQMWMKLPDLDRCYWTNEVLSMMASSAGQPIAIDTSSSDEARVCIEVDVNEPLVTGVHVDDGEGGFWQSFRYEIPGLCFHCGRIGHKSEYCPHPRRRNMQTYGSHNLAPRREHGLRPLRYFSWHRPGAGWVKLNFDGSFKGRTGRAGGGGLLRDAQGSFIAAFATPLDTSNSLMAEIGALEGGLRLALKLNVERILIEGDSKITIEMLSGKREATGEEEKSLMTHIRELLQGFQEVTARHEFREANRPADHLANIATQAHEPMEWHPHPPHSLLPFLHHDQFSRVVPRLVL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0411 410 Gene3D - 248 377 IPR036397 GO:0003676
Vvi4g0411 410 CDD RNase_H_like 252 373 IPR044730 -
Vvi4g0411 410 SUPERFAMILY Ribonuclease H-like 248 373 IPR012337 -
Vvi4g0411 410 Pfam Reverse transcriptase-like 253 374 IPR002156 GO:0003676|GO:0004523
Vvi4g0411 410 ProSiteProfiles RNase H type-1 domain profile. 246 377 IPR002156 GO:0003676|GO:0004523
Vvi4g0411 410 ProSiteProfiles Zinc finger CCHC-type profile. 197 211 IPR001878 GO:0003676|GO:0008270
Vvi4g0411 410 PANTHER OS05G0353850 PROTEIN 237 400 - -
Vvi4g0411 410 SUPERFAMILY Retrovirus zinc finger-like domains 195 219 IPR036875 GO:0003676|GO:0008270
Vvi4g0411 410 Pfam Domain of unknown function (DUF4283) 39 159 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0411 Vvi-Chr4 3595101 3596333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0411 241 404 Glycoside Hydrolase AT2G33160 29.762 1.39e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0411 - - qlo:115954771 155.992