Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0410 ATGGCAGAATTACCTCTTGTGTTGATCTCCCCGTGGACTGCTTTCTACTCTCAACCTGCCGAGTACTTTCGTCCAGTTGAACATGAGTTGCAAGAGTTTGGGTGGAAGAAGAGAAGCTTGTTGGGTAAATTGTTTGGAAAGAAAAGCGTTCTAAGTATACACGATATGATCGACAAATGGGACTTAGATAATAGTGTGATCGTAAAATTCTTAGGGGATGAATTTTATTTATTTTCATTCCCTTTGGAAAGCGATTTCATAAAGGTTTGGTCCCACGGAACTGTGTTTGCGGAAGGACTGTGTCTTGCGGTGAGAAGATGGTGTCCAGGATTAGAATTAGACTCCAAGAGTATGTCGTATACTCAAATGTGGATGAAACTTCCGGATCTTGATCGTTGCTACTGGACCAATGAGGTTTTGTCCATGATGGCTTCTTCAGCCGGCCAGCCAATAGCTATTGATACTTCTAGTAGTGATGAAGCCCGAGTCTGCATTGAGGTTGACGTCAACGAACCACTGGTGACGGGAGTGCATGTGGATGATGGAGAGGGAGGATTCTGGCAGAGTTTCCGCTACGAGATTCCGGGGTTGTGCTTCCACTGTGGAAGAATTGGCCACAAGAGAGAATATTGCCCACATCCACGTCGGAGAAACAAGCAAACCTATGGAAGTCACAACTTGGCTCCTAGAAGAGAACATGGGCTTCGACCCCTTCGGTATTTTTCATGGCATCGTCCGGATGCTGGGTGGGTGAAGTTGAACTTTGACGGCTCATTCAAAGGGAGGACAGGGAGAGCGGGAGGTGGAGGCTTACTAAGAGACGCACAAGGCTCCTTCATCGCTGCTTTTGCCACACCATTGGACACAAGCAACTCATTGATAGCCGAGATTGGGGCACTTGAAGGTGGGCTCAGGTTGGCTTTGAAGTTGAATGTGGAGCGGATTTTGATTGAAGGCGACTCTAAGATTACAATAGAGATGTTAAACGGGAAGCGGGAAGCCACAGGGGAAGAAGAGAAGTCCCTTATGACTCATATCCATGAACTTCTGCAAGGCTTCCAAGAAGTTACTGCTCGCCATGAATTCAGGGAAGCAAACAGGCCGGCTGACCACCTAGCAAATATAGCAACACAAGCACATGAGCCTATGGAGTGGCACCCCCACCCTCCTCATTCCTTGCTTCCTTTTCTTCATCACGACCAATTCAGCAGGGTAGTTCCTAGACTTGTTTTGTAA 1236 0.4717 MAELPLVLISPWTAFYSQPAEYFRPVEHELQEFGWKKRSLLGKLFGKKSVLSIHDMIDKWDLDNSVIVKFLGDEFYLFSFPLESDFIKVWSHGTVFAEGLCLAVRRWCPGLELDSKSMSYTQMWMKLPDLDRCYWTNEVLSMMASSAGQPIAIDTSSSDEARVCIEVDVNEPLVTGVHVDDGEGGFWQSFRYEIPGLCFHCGRIGHKREYCPHPRRRNKQTYGSHNLAPRREHGLRPLRYFSWHRPDAGWVKLNFDGSFKGRTGRAGGGGLLRDAQGSFIAAFATPLDTSNSLIAEIGALEGGLRLALKLNVERILIEGDSKITIEMLNGKREATGEEEKSLMTHIHELLQGFQEVTARHEFREANRPADHLANIATQAHEPMEWHPHPPHSLLPFLHHDQFSRVVPRLVL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0410 411 CDD RNase_H_like 253 374 IPR044730 -
Vvi4g0410 411 Pfam Reverse transcriptase-like 254 375 IPR002156 GO:0003676|GO:0004523
Vvi4g0410 411 SUPERFAMILY Ribonuclease H-like 249 385 IPR012337 -
Vvi4g0410 411 Gene3D - 249 378 IPR036397 GO:0003676
Vvi4g0410 411 PANTHER OS05G0353850 PROTEIN 238 401 - -
Vvi4g0410 411 Pfam Zinc knuckle 167 212 IPR025836 -
Vvi4g0410 411 ProSiteProfiles Zinc finger CCHC-type profile. 198 212 IPR001878 GO:0003676|GO:0008270
Vvi4g0410 411 Pfam Domain of unknown function (DUF4283) 37 160 IPR025558 -
Vvi4g0410 411 SUPERFAMILY Retrovirus zinc finger-like domains 196 220 IPR036875 GO:0003676|GO:0008270
Vvi4g0410 411 ProSiteProfiles RNase H type-1 domain profile. 247 378 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0410 Vvi-Chr4 3587605 3588840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0410 242 405 Glycoside Hydrolase AT2G33160 29.762 2.79e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0410 - - qlo:115954771 152.525