Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0387 ATGCCTATAAAAGCTATCCTCATTGAAGGCCAAGACATCATCCCATCTTGTGGGCTCAAGACTCGGCCACTTAATGGTTGGGGTGGGTATGGGCTTTTGGTTAGTTTGGCTTTGATTTGTTCATTTTCTCGGATGAGAAGTCATCTTAATTTGGGGGACGTTAAGCCCGAAGATGTTTCAGAAGACACCTTGAAGGCCGTGGCTGAAATTCTGAGAAATTCTACTACCCTTAAGGTTTCTGAAGATGGGAAAAAGATTGGCAGGGCTACTGAACTTTTAAAGCCAGAAGAGGTGGTAGAGCAAGTGAACATAAGGACAATTGCAGCATCACCCCTAGAATATGATGCAAAGCTTGAAGATGTGGAGGCTTACTTTGGTCAAATTGCCAAGGTTAATAGTGTTAGGCTGCCCCGTCATGTTGCAGAGAAAAGGGTATTTTGTGGTACGGCCCTAATTCAATACTCAACTGAGGAAGATGCTGCGAAGGTTTTGCAGCAAAGCTTGGTTTATGCTGAAGGTCTAATTTCTGTCGATGCTTTGGCTCCCTCTTGTATTGGTGTTCACGTCCATTTCGATAAATTCTCTCAACCCGCCGGAGAAGAGGCTCAAGTAGATGACTCAAAAATAGGTAACTTCTTCTTGGAAACAGACCTGCATCCAGGTAAAAAAATGAAGCTGAACTTGGCCACAACTACAAATGGAGCTGTTTTCTTGCCTCATCAAGTTGCTGAATCCATGCCCTTTTCATCCAACAAGCTACCCGAAATCTTGAACCGGTTTTCCTGA 786 0.4389 MPIKAILIEGQDIIPSCGLKTRPLNGWGGYGLLVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATELLKPEEVVEQVNIRTIAASPLEYDAKLEDVEAYFGQIAKVNSVRLPRHVAEKRVFCGTALIQYSTEEDAAKVLQQSLVYAEGLISVDALAPSCIGVHVHFDKFSQPAGEEAQVDDSKIGNFFLETDLHPGKKMKLNLATTTNGAVFLPHQVAESMPFSSNKLPEILNRFS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0387 261 Gene3D - 96 177 IPR012677 -
Vvi4g0387 261 CDD RRM1_La 106 172 - -
Vvi4g0387 261 ProSiteProfiles BURP domain profile. 212 261 IPR004873 -
Vvi4g0387 261 SUPERFAMILY RNA-binding domain, RBD 97 165 IPR035979 GO:0003676
Vvi4g0387 261 Gene3D - 20 95 IPR036388 -
Vvi4g0387 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 166 IPR000504 GO:0003723
Vvi4g0387 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 231 IPR000504 GO:0003723
Vvi4g0387 261 PANTHER LUPUS LA PROTEIN-RELATED 34 203 IPR045180 -
Vvi4g0387 261 SMART la 11 89 IPR006630 -
Vvi4g0387 261 Pfam BURP domain 212 261 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0387 Vvi-Chr4 3339976 3350091 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0387 K11090 - vvi:100250699 262.307