Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0375 ATGGTAGTGACACACCTCCCCAAGCTCCACACCCACTTCTTCATTTCCACGCCTCCGCCCTCCCTCTACACCCACCACCTCTCCCTCCTCCGCATTCCCAAGTCCACCCTCACTACCGCCGCCACCGCCGCCACTAGTTCTACTACTCATCCACCACCCATCTCCACCCCTGACACCCACATCCAAATTCCCCTTCAAAACCTTTTTGTGCCCCCAGAAACTGACATCTCCGCCACCAGCACCCCTCTCACTGCTAGAATCTTGAAGGGCTCCAACATAGTGTTGAGTAAGTATGCTAATGATGCTCAGGTTGTGCAGGCTGAGTTTGTGAAGAGCAGTGTCAGGACTGAGGACTGTCCCTCCGATGGGTTGCCTGAATTTGCCCTCGTGGGACGGTCTAATGTGGGAAAATCCTCTTTGCTCAATTCGCTCGTTCGCCGGAAACGGCTCGCTCTTACCTCCAAAAAACCCGGGAAGACACAATGCATCAATCATTTCCGGATCAATGATAGTTGGTATCTAGTGGATTTGCCTGGATATGGGTATGCTGCTGCTCCACAAGAGCTTCGAACTGATTGGAATAAGTTCACTAAAGACTATTTCCAGAGCCGCTCGACCTTAGTTTCTGTATTCCTTCTTGTAGATGCTAGCATTCCTGCTAAAAAGATTGATCTCGAATATGCCAGTTGGCTGGGTGAGAATCAGATTCCCATGACATTGATCTTCACCAAATGTGACAAGCGCAAAAAGAAGAAAAATGGAGGGAAGAGACCGGAAGAAAATGTTGAAGATTTTCAAGGATTAATACGTGACTTCTTCCAAACAGCACCACCTTGGATTATGACCAGCAGTGTATCCAATCAAGGTCGTGATGAGATACTACTGCACATGGCTCAGCTTCGCAACTACTGGCTCAAGCACTAA 924 0.4892 MVVTHLPKLHTHFFISTPPPSLYTHHLSLLRIPKSTLTTAATAATSSTTHPPPISTPDTHIQIPLQNLFVPPETDISATSTPLTARILKGSNIVLSKYANDAQVVQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYAAAPQELRTDWNKFTKDYFQSRSTLVSVFLLVDASIPAKKIDLEYASWLGENQIPMTLIFTKCDKRKKKKNGGKRPEENVEDFQGLIRDFFQTAPPWIMTSSVSNQGRDEILLHMAQLRNYWLKH* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0375 307 NCBIfam ribosome biogenesis GTP-binding protein YihA/YsxC 107 295 IPR019987 GO:0005525
Vvi4g0375 307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 303 IPR027417 -
Vvi4g0375 307 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 43 307 - -
Vvi4g0375 307 Pfam 50S ribosome-binding GTPase 127 244 IPR006073 GO:0005525
Vvi4g0375 307 Hamap Probable GTP-binding protein EngB [engB]. 112 301 IPR019987 GO:0005525
Vvi4g0375 307 Gene3D - 98 303 IPR027417 -
Vvi4g0375 307 CDD YihA_EngB 126 300 IPR030393 GO:0005525
Vvi4g0375 307 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 123 303 IPR030393 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0375 Vvi-Chr4 3216246 3227825 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0375 K03978 - vvi:100257669 579.326