Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0374 ATGGCTCCTCCGGCACAATCTCAACGATCTCCATCACCTTCTCAACCTTCTGGAAAAGGTGAAGTCTCAGATCTAAAGTTGCAGCTCCGGCAGCATGCTGGCAGCCGGGCACCAGGTGCTGATGATGCAAAGCGGGAGCTGTTCAAGAAGGTGATCTCATACATGACAATTGGCATCGATGTGTCGTCGCTTTTTGGTGAGATGGTGATGTGTTCAGTGACATCTGACATTGTTCTGAAGAAGATGTGTTATCTCTATGTTGGGAACTACGCTAAGGGAAATCCTGATCTTGCACTTCTAACGATCAATTTCCTTCAGAAGGATTGTAAGGATGAGGATCCAATGATTCGTGGGCTTGCTCTGAGGAGTCTTTGTTCGCTGCGAGTGGCGAATTTGGTGGAGTACTTGGTGGGTCCCTTGGGATCAGGGCTGAAAGATAGTAATAGTTATGTAAGGACGGTGGCAGCTAGTGCAGTTCTGAAATTATATCACATATCAGCTTCAACATGTGTTGATGCAGATTTTCCAGCAATTCTTAAGCATTTAATGCTTAATGATCAAGATACTCAAGTAGTTGCAAATTGTTTATCATCTCTACAAGAGATCTGGAGCTCAGAAGCAAGTACCTCTGAGGAAGCATCCAGGGAGAGAGAAGCTTTGCTTAGCAAGCCAGTGATATATTACTTTTTGAATCGGATCAAGGAATTCAGTGAATGGGCACAGTGTCTCGTACTTGAGTTGGTCGCTAATTATGTACCTTCAGATAACAGTGAAATATTTGACATTATGAATCTCCTGGAGGATAGGCTTCAGCATGCAAATGGTGCTGTTGTACTAGCAACGATCAAGGTGTTTCTACAATTGACCTTGTCCATGGCTGATGTTCATCAGCAGGTGTATGAACGGATTAAAGCCCCTTTGCTTACCTTAGTGAGCTCAGGAAGTCAAGAACAATCTTATGCAGTTTTAAGCCACCTTCATCTCCTGGTGATGCGGGCACCCATTCTATTTTCCTCCGACTACAAACACTTCTATTGCCAGTACAATGAGCCATCTTATGTTAAGAAGTTGAAACTCGAAATGTTGACTGCAGTGGCAAATGAGAGCAATACTTATGAAATTGTGACGGAATTATGTGAATATGCTGCAAATGTTGATATTCCCATTGCAAGAGAGTCAATCCGGGCTGTTGGGAAAATAGCACTGCAGCAGTATGATGTGAATGCTATCGTTGATAGGCTTCTTCAATTTCTTGAGATGGAGAAGGACTATGTGACTGCTGAAACTCTGGTGCTTGTAAAAGATCTGCTAAGGAAATATCCACAATGGAGTCATGATTGCATTGCAGTTGTTGGGAATATCAGCAGCAAAAATGTTCAGGAGCCCAAGGCCAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCTTACGTTTTAGAAAGTGTAGTTGACAATTGGGATGATGAGCATTCTGCCGAGGTTCGATTGCATCTTCTTACAGCAGTACTCAAGTGTTTCCTGAAAAGGCCTCCTGAGACTCAGAAAGCATTGGGAGCTGCATTGGCTGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGAGCCTTATTCTACTACAGGCTTTTGCAATACAATGTATCTGTGGCAGAGCGTGTTGTGAACCCTCCAAAGCAAGCTGTTTCAGTCTTTGCAGATACTCAAAGCAGTGAAGTCAAAGATCGCATATTTGACGAATTTAACAGTCTATCTGTTGTATATCAAAAGCCATCTTACATGTTTACAGATAAGGAACACCGGGGCCCATTTGAGTTCTCAGACGAACTTGGAAGTCTATCTATTGGGGCAGATTCTGCAGATAATGTCGTTCCAGCTCAGAGAGTTGAGGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAGAAGGAAGAAAGTAGAGGTGCCACTAACAATGGTTCTGCTTACAATGCTCCTATGTATGATGGTACTTCTATGCCCACAGGTGCTTCACAATTGCAATCTGAACTGGCAATTTCAAACACAATGGTACCATCCCACTCTCCATCATCAAGCTTGGCCGTTGATGATCTGCTCGGTCTAGGTGTACCACTTGCACCTGCATCTCCTCCTCCTCCTCCTCCTTTGAAGCTTAATGAAAAAGCTGTTCTAGATCCAGGCACCTTTCAGCAAAAATGGCGCCAACTACCAATTTCTTTATCACAGGATTACAGCATGAGTCCTCAAGGAGTTGCTGCATTGACAAGACCTCAAGCCTTCCTCCGGCACATGCAGGGCCACTCCATCCACTGCATTGCCTCAGGTGGTCAAGCCCCAAACTTCAAGTTCTTTTTCTTCGCGCAAAAGGCAGAAGAACCGTCAACCTTTCTTGTAGAGTGTATAATCAACACTTCATCAGCTAAAGGACAAATAAAAATCAAGGCCGATGATCAAAGTATGTCACAGGCTTTCTCAACTTCATTCCAATCAGCCTTGTCTAAATTCGGAACAACATAG 2535 0.4375 MAPPAQSQRSPSPSQPSGKGEVSDLKLQLRQHAGSRAPGADDAKRELFKKVISYMTIGIDVSSLFGEMVMCSVTSDIVLKKMCYLYVGNYAKGNPDLALLTINFLQKDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDSNSYVRTVAASAVLKLYHISASTCVDADFPAILKHLMLNDQDTQVVANCLSSLQEIWSSEASTSEEASREREALLSKPVIYYFLNRIKEFSEWAQCLVLELVANYVPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTLVSSGSQEQSYAVLSHLHLLVMRAPILFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAETLVLVKDLLRKYPQWSHDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESVVDNWDDEHSAEVRLHLLTAVLKCFLKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGPFEFSDELGSLSIGADSADNVVPAQRVEANDKDLLLSTSEKEESRGATNNGSAYNAPMYDGTSMPTGASQLQSELAISNTMVPSHSPSSSLAVDDLLGLGVPLAPASPPPPPPLKLNEKAVLDPGTFQQKWRQLPISLSQDYSMSPQGVAALTRPQAFLRHMQGHSIHCIASGGQAPNFKFFFFAQKAEEPSTFLVECIINTSSAKGQIKIKADDQSMSQAFSTSFQSALSKFGTT* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0374 844 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 12 802 IPR026739 GO:0016192
Vvi4g0374 844 Pfam Adaptin N terminal region 39 551 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi4g0374 844 FunFam Beta-adaptin-like protein A 13 608 - -
Vvi4g0374 844 Gene3D - 14 608 IPR011989 -
Vvi4g0374 844 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0374 844 Pfam Beta2-adaptin appendage, C-terminal sub-domain 725 838 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vvi4g0374 844 FunFam Beta-adaptin-like protein 713 842 - -
Vvi4g0374 844 Gene3D - 715 842 IPR012295 -
Vvi4g0374 844 SMART B2_adapt_app_C_2 722 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vvi4g0374 844 MobiDBLite consensus disorder prediction 640 675 - -
Vvi4g0374 844 PIRSF Beta_adaptin 10 844 IPR016342 GO:0015031|GO:0030276
Vvi4g0374 844 MobiDBLite consensus disorder prediction 649 675 - -
Vvi4g0374 844 SUPERFAMILY ARM repeat 40 598 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0374 Vvi-Chr4 3200325 3211901 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0374 - - vvi:100252486 1541.17