Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0373 ATGGGCTTTGTCCTTAGGGTTTTATCAGTAGCTAAAAGGGGTTTAAGGCCTCGATTGGTTCTAATTCCTTGTAGATCTCAACGCTTGTTTTGCGACAAGCCATTGGTTTCAAATCCTTTGCTCATCAAATTACTTCAGGAATCCATTTCTCGGATCAAAACTGTACTCGATTCAGAGGACAATTTTACCTTCAAAAGTTCAGATTTCTCCTGGGATATTCTCCTCACTACTCTCAAATCTTCATCTCCTGCGAAAGCTCACCTGGTCTTGGAATGGAGATTAGAGAAAATGGTGAGAGACAATGAGAGGGACCTTGTGCCTTATTTGGAGTTGATATTTCTATGCAGCAAGGTCCAAAATGTCCCATTTGCAATGCGAGTCTTTAATTCAATGGAGGCTCATGGAATCAAGTTGACTTCTTCTGTTTTTAATGCACTGATATACACTTGCCTGTCTTCAGGTAATGTAATGACAGCCCTTAGCTTATTTGAGATAATGCAGAGCTCAGAGAACTGTAAACCCAATTCTGAAACCTATAATACTTTCATATCTGTGTACTCAAACTTGGGAAACGATAAGGCCATGCAGGCATGGTACTTGGCCCAAAAGGGTGCTGGGTTCTCTGCAGATCTTCGAACTTATGAATCTCTCATTTCGGGTTGTGTTAGATCAAGAAATTTTGATTGTGCTGATAGATTTTATGAAGAAATGATGTTATCAGGGATCATGCCTAATGGGCAGATATTGGAGAATATACTCAGGGGCCTTTGTGAGCAGAGAAGCATTAGTAAAGTTGAACAGCTCTTAAAGTTTATGATGGATGGTGAGTGGGAGATTAATGTGTCGATGGCAGAGAAGCTCATGGGGTTGTATTTTGAACATGGGACAGTGGAAAAGATGGAGGAGCTGCTTCTAAATTTAATGAACTCGAATCAAAGTTTTGCAGTCTTGCAGCAGGTGCATTGCGGAATTATCAGGATGCATGCCATGTTAGATAGATTGGATGATATGGAATACTCTGTTGGGAGGATGTTAAAGCAAGGGATGTCATTCAGATGCCCAGATGACATCGAGAAAGTGGTTTGTGCATACTTCAGGCGGGAAGCTTATGAGAGACTGGACTTGTTTTTGGGACATATAAAGGGTTCTTACAAGTTAACAAAATCAACTTATGACTTGTTGGTTGCTGGCTATCGAAGAGCTGGATTATCTGAGAAACTGGATTTGGTGATGGATGGTATGAAGTTAGCTGGATTTTTCTAG 1263 0.407 MGFVLRVLSVAKRGLRPRLVLIPCRSQRLFCDKPLVSNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSMEAHGIKLTSSVFNALIYTCLSSGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLRTYESLISGCVRSRNFDCADRFYEEMMLSGIMPNGQILENILRGLCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAGFF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0373 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vvi4g0373 420 Pfam PPR repeat family 141 185 IPR002885 -
Vvi4g0373 420 NCBIfam pentatricopeptide repeat 142 175 IPR002885 -
Vvi4g0373 420 NCBIfam pentatricopeptide repeat 213 245 IPR002885 -
Vvi4g0373 420 PANTHER EXPRESSED PROTEIN 37 419 IPR044179 GO:0003729
Vvi4g0373 420 Pfam PPR repeat 213 242 IPR002885 -
Vvi4g0373 420 Gene3D Tetratricopeptide repeat domain 41 191 IPR011990 GO:0005515
Vvi4g0373 420 Gene3D Tetratricopeptide repeat domain 192 324 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0373 104 350 Glycosyltransferase AT1G05670 25.397 2.35e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0373 - - vvi:100262795 823.542