Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0371 ATGGAAGAATCTGGCAATGAGAGGGCTCATTCTGATGCTCCCACCGAGCATCAGGATGGAACTACTGATGTCAAGAAAGAAGAGGTTGAAGCATTACAGACCGAGGTAAAGCGTCGAGATGGTAAGCACGAATTACATCCAGTTTCACAATCTGCTGATCCCCAAAGTCAGGTCCGCTGCATTTCTTGTTTGAGCAAAACTAGTTGCCGAACTGTGCGCTCAAGGACAAAACTAATGAACATTATGATAGAAAAAGGGAGGCCCCAGGAAGTTCAGTCCATTTTGGATAGTATAATTGAAGGAGGTCATAAGCCATCCTTGGTAACATACACTACCCTCTTGGCTGCATTGACCATCCAGAAGCACTTCGATTCCATTCACTCAATTATCTCTCAGGTGGAAGAAAATGGAATGGAGCCTGATTCTATATTCTTTAATGCTGTTATAAATGCTTTTTCCGAATCTGGAAATATGCAGGAAGCCATGAAATACTTCTGGAAGATGAAGGAAAGTGGATCTAAGCCCACTACCAGCACTTTCAACACATTAATTAAGGGATATGGAATTGCTGGTGAGCCTGAAGAATCTCAGAAACTATTAGAGTTAATGTCTCAAGATGAAAATGTGAGACCCAATCTGAGGACTTATAATGTACTTGTAAGAGCATGGTGTAACAAGAAGAACATTATGAAGGCATGGAATGTGGTCTATAAGATGGTAGCTTCTGGTTTGCAACCCGATGCTGTTACTTACAACACAATAGCAACAGCTTATGCTCAGAATGGAGAGGCAAGTCAAGCTGAAGGGATCATTTTAGAGATGCAAAACAGTAATGTGCAGCCTAATGAGAGAACATGCTGTATCATCATAGGTGGCTACTGTAAAGAAGGGAAAATAAAGGAGGCTTTGCAGTTTGTCTACAGGATGAAGGATCTTGGGCTGCAGCCTAATCTTGTTGTTTTCAACTCACTGATCAAAGGCTTCATTGATGCTGTGGATAGAGATGGGGTCAACGAGGTTCTAACATTGATGGAAGAATTTGGGGTCAAACCAGATGTGATTACATTTAGCACCATCATGAATGCATGGAGTGCAGCAGGGTTCATGGATAAGTGCAGGGAAATCTTTGATGACATGGTGAAGGCCAGAATACAACCTGATGCACATGTATACAGCATCCTAGCTAAAGGTTATGTGCGTGCAGGAGAACCTGAGAAAGCTGAAGAAATCCTGAATGCCATGATTAAATCCGGTTTCCATCCTAATGTGGTGATCTTTACAACCATTATCAATGGATGGTGCAGTGCCGGGAGAATGGAGTATGCAATCAAGATTTTTGAGAAGATGTGTGAATGTGGAATAGCTCCAAATTTGAAGACTTTTGAAACCTTAATTTGGGGATATGGAGAAGCAAGACAGCCATGGAAATCAGAGGAAGTGCTCCAAATCATGGAAGAATTTAATGTTCAGCCTGAGAAAACTACTCTCTTGCTTGTCGCAGAAGCCTGGCGTGCAACCGGATTAAAGAAAGAGGCAAATAGAATATTGAGTGCTGTGAAAAATGAGGAAATGACCCATGAAACAGACAGAGAAGACAAGATACCAGTGGGGAGCTTGGAGAAACATTATCAAAAGCCAAGTGCCTCATTTCCAAACCAGTTACAGCTACCAAATTTAGTTATAAGTGATCAAAAAGGTTCAGGTTCTGCTACCAAAAGAAGCCGGATGGTGTTGGGAGACACTGACTTTTCACTGGAGAGTTCATGGACTGCTACCAGATCCTTGTCTCTTACCCATAGTTGTACATTTGGGGCAAGATCACCAATTATCTGCCAGAAGCAGTCTCATGGCCAGCTTTGTATGTATAGTCAGCTTGCACATTCATGTCCACTGGTGTTCTTGAACTGA 1908 0.4219 MEESGNERAHSDAPTEHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQKPSASFPNQLQLPNLVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQKQSHGQLCMYSQLAHSCPLVFLN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vvi4g0371 635 Pfam Pentacotripeptide-repeat region of PRORP 158 288 IPR033443 -
Vvi4g0371 635 MobiDBLite consensus disorder prediction 1 47 - -
Vvi4g0371 635 MobiDBLite consensus disorder prediction 1 52 - -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi4g0371 635 Gene3D Tetratricopeptide repeat domain 72 235 IPR011990 GO:0005515
Vvi4g0371 635 Gene3D Tetratricopeptide repeat domain 344 550 IPR011990 GO:0005515
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi4g0371 635 Pfam Pentatricopeptide repeat domain 308 363 IPR002885 -
Vvi4g0371 635 Pfam Pentatricopeptide repeat domain 94 152 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vvi4g0371 635 PANTHER OS01G0228400 PROTEIN 10 635 - -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 145 176 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 215 248 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 249 283 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 285 317 IPR002885 -
Vvi4g0371 635 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 211 IPR002885 -
Vvi4g0371 635 Pfam PPR repeat family 421 468 IPR002885 -
Vvi4g0371 635 Gene3D Tetratricopeptide repeat domain 236 334 IPR011990 GO:0005515
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vvi4g0371 635 Pfam PPR repeat 390 419 IPR002885 -
Vvi4g0371 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0371 Vvi-Chr4 3185998 3189829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0371 69 532 Glycosyltransferase AT1G05670 26.383 5.45e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0371 K17710 - vvi:100267944 1269.6