Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0370 ATGGACGAGCGGCTCCATGAGGCAGTTCTAAAGGGCGATGTATCGGCCTTCCTTGTTCTTGTTCAAGAAGACGAGGATATCCTCAAACAAGTAGTTCCCAGATCATCAAGCACCATTCTGCATTTAGCAGCAAGGTTGGGGCACCCTGAATTGGCAGCAGAGATATTGAAGTTAAGTCCTGAATTGGCAGCAGCGAGGAATGAAAAACTGGACACTCCTCTGCATGAAGCATGCAGAGAGGGGAGAGCAGAGATTGTGAAACTTCTGCTGGAGACCGATCCCTTGATCGCTGGCAAGGTAAACAGGGATAACGAGACTGCGCTGTATGTAGGGTGTGACAGAGGGAGGCTTGATGTAGTGAAGCAGCTTCTGAACCATCCATGGCTGTTGGCATTAGAATTGGATGGCTTCACTACTTCACTTCATCTTGCAGCTTCAAGGGGACATACAGATATAGTGAAGGAGATTCTAAAAGTACGCCCAGACTTCGCAAGGGAGAAGGACTTGGATGGATGCATACCATTGCACCTCGCTTGCAGCAAAGGCCACCTTGAGGTAACAAGTGAGCTTCTGAGATTAGACCCAGACCTCACTTCCTTACAAGACAAGGATGGTCTAACACCTCTGCATTGGGCAATTATCAAAGGGCACCTCAACATTATCGATAAGATACTTGCCATTGGCCTCCATTTAGCTCAGACGACAACTAAACATGGAGAGACAGTTTTACACCTAGGAGTAAAGAACAACAGGTATGAAGCAGTCCAGTACTTGATGGAGAAACTCAACTTCACTCAACTCCTTAACACCCCAGATAAAAATGGCAACACCATCTTGCATCTTGCTGCTGCTGGAAAACTTACCACTATGGTCAAGTACCTACTTGAGCTGGGTGTGGATGTCAATGCACAGAACTGCAAAGGTTTCACTTCTCTTGATGTTATTACATCTGATGCTAGTAACTCCAAGGCAGGACTTGAGATTGTGACTGCATTATGCCAGGCTGGGGCTAAGAGATGTAGCCAATTGTCACCTGCATCACCAGAAATTCAAGAAAACCATCAACCAACATCTGGAGTATTAAACAGCCTAAATGTAGCATCTCCTTGGCCAAAAGTGATGCCAGATTCTCCTGTCCAACATCACAACAAGAAGCATGACCAAAGCCGCAAAAAGCTGCTTGACCAGAATGAGGGTCTGCGCAATGCTAGAAACAAATTCACAGTTGTTGCAGTTTTAGTGGCAACTGTTACGTTTTCTGCAGGCATAAACCCTCCTGGAGGTTTTAATCAGGACACTGGGAAGTCCATGTTGGGGAAACAAACTCCTTTCAAGGTCTTCATGGTATGCAACATTCTAGCATTGTTCCTGTCTCTGAGCATAGTCATTGTTCTTGTCAGTGTCATTCCTTATCGGCGAACATCCATGATGAGGCTACTGGTTTTTACCCATAAAGTGATGTGGGTATCCATGATATTTATGGCAGCAGCTTACATGGCTGCTACATGGATGATTATACCTCCTGGACCAGGTAGCAGGTGGGAGTTTGCAGTATTGTTGTGTTTAGGGGGAGGGTGCACAATGGCCATATTTTTAATTACAGGGATGGTGCTAGTGAGGCAATTCAGAAAGTACCAATTGAGGAAAGTGAATGCGAAGACGTATGGAGGCCCAGACAACATCATCAGTCATGCCGGCGAGATGCAAATGATAAAGAGGCATGGCTATGAATCAACCTGTAACTCAGATGTTGATAGCTCTGATCAAGGGGGTTACCACCTGTATTAG 1788 0.4569 MDERLHEAVLKGDVSAFLVLVQEDEDILKQVVPRSSSTILHLAARLGHPELAAEILKLSPELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNRDNETALYVGCDRGRLDVVKQLLNHPWLLALELDGFTTSLHLAASRGHTDIVKEILKVRPDFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNIIDKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHLAAAGKLTTMVKYLLELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRCSQLSPASPEIQENHQPTSGVLNSLNVASPWPKVMPDSPVQHHNKKHDQSRKKLLDQNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQDTGKSMLGKQTPFKVFMVCNILALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGSRWEFAVLLCLGGGCTMAIFLITGMVLVRQFRKYQLRKVNAKTYGGPDNIISHAGEMQMIKRHGYESTCNSDVDSSDQGGYHLY* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0370 595 PRINTS Ankyrin repeat signature 205 220 IPR002110 GO:0005515
Vvi4g0370 595 PRINTS Ankyrin repeat signature 290 304 IPR002110 GO:0005515
Vvi4g0370 595 Gene3D - 265 353 IPR036770 -
Vvi4g0370 595 Gene3D - 135 264 IPR036770 -
Vvi4g0370 595 SUPERFAMILY MFS general substrate transporter 369 544 IPR036259 -
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat profile. 274 306 IPR002110 GO:0005515
Vvi4g0370 595 Gene3D - 2 134 IPR036770 -
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat profile. 204 236 IPR002110 GO:0005515
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat region circular profile. 170 197 - -
Vvi4g0370 595 Pfam Domain of unknown function 398 504 IPR026961 -
Vvi4g0370 595 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 67 548 - -
Vvi4g0370 595 Pfam Ankyrin repeats (3 copies) 5 91 IPR002110 GO:0005515
Vvi4g0370 595 Pfam Ankyrin repeats (3 copies) 175 261 IPR002110 GO:0005515
Vvi4g0370 595 Pfam Ankyrin repeats (3 copies) 100 158 IPR002110 GO:0005515
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat profile. 69 91 IPR002110 GO:0005515
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vvi4g0370 595 Pfam Ankyrin repeats (many copies) 266 313 IPR002110 GO:0005515
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat region circular profile. 204 228 - -
Vvi4g0370 595 SMART ANK_2a 69 102 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 274 303 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 136 165 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 204 233 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vvi4g0370 595 SMART ANK_2a 238 266 IPR002110 GO:0005515
Vvi4g0370 595 SUPERFAMILY Ankyrin repeat 5 334 IPR036770 -
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat region circular profile. 274 305 - -
Vvi4g0370 595 ProSiteProfiles Ankyrin repeat region circular profile. 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0370 Vvi-Chr4 3182895 3185389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0370 5 595 Miscellaneous Gene Families AT1G10340 33.824 1.07e-96 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0370 - - vvi:100245624 1169.45