Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0366 ATGGGAACGGCGTCTTTTGATGAAGAAACAGTGAAGAAAGTCATTCGTCAGGTGGAGTTCTACTTTAGTGATAGTAATCTTCCAAGAGACAATTTTCTCAAGAAAACCATAAGTGAGAGTGAAGATGGATTGGTTAGTTTGGCTTTGATTTGTTCATTTTCTCGGATGAGAAGTCATCTTAATTTGGGGGACGTTAAGCCCGAAGATGTTTCAGAAGACACCTTGAAGGCTGTGGCTGAAATTCTGAGAAATTCTACTACCCTTAAGGTTTCTGAAGATGGGAAAAAGATTGGCAGGGCTACTGAACTTTTAAAGCCAGAAGAGGTGGTAGAGCAAGTGGACATAAGGACAATTGCAGCATCACCCCTAGAATATGATGCAAAGCTTGAAGATGTGGAGGCTTACTTTGGTCAATTTGCCAAGGTTAATAGTGTTAGGCTGCCCCGTCATGTTGCAGAGAAAAGGGTATTTTGTGGTACGGCCCTAATTGAATACTCAACTGAGGAAGATGCTGCGAAGGTTTTGCAGCAAAGCTTGGTTTATGCTGGTGTTGAATTGGAACTAAAACCAAAGAAAGATTTTGATGCTGAAAGAGCACAACAAACTGAGGAATTTGAGAATTCTCGTGCCCTCTTGGGTTCAAATCGTAAAAACAATTCAAATGCTGAATCAACCTATCCCAAAGGCTTAATCGTTTCCTTTACATTAAAGAGAGCTGGGGGTTCTACAGAACACAATGGTACTCATGAGCCAGTGAATGATAATGCAGATGTTGGCAAAACAAATACAGATATAGATTCAAAAGAAAATGTCACTGGAGAAACTGAGGACAAGGCTTCAGAGAATATTAATAATGATGAAGAAAACTCTGGGGAGGATATTGAGAAGGAAAGTGAAGAAAAAGTTGAGGAGAAAACTAGTTTGGAAAGTGAAGGAAAGGAAACCGAAGATGGACAGAAATCTTCTGAAGGTTGTGATTTGAAAGGTGAAGAAAAAGCAACAGGGGAACAAAAACCCACTGCTGCTACCTATAAAGACAACATGGATGTTGTCATGCGTGAGGATTTGAAGAGTGTCTTTCAAAAATTTGGCACCGTTAAGTTTGTTGATTTCAAGATAGGAGAAGAATCAGGATACATTCGATATGATGAACCTGAAGCAGCTCAGAAAGTACGTGCTGCTGCAGTGCTCTCTGAAGAAGGGGGTCTAACAGTAAAGAATTACATTGCTAATTTAGAACCCGTAACAGGTGAGGCCGAAAGGGAGTATTGGAGCCTGCTCCGTGGTAATCAAGAAAAACATAGAGGATTTAAGGGCAATCGAGGAAGGGGAGGAAAACAGAATAGAGGCGGGAAATTTGGTCGCCCCAGAGATAACGATTATGCAACCGGCCGTCCAAATAAAACTCAGAAAGTTGGAGCAGCATAA 1428 0.4104 MGTASFDEETVKKVIRQVEFYFSDSNLPRDNFLKKTISESEDGLVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATELLKPEEVVEQVDIRTIAASPLEYDAKLEDVEAYFGQFAKVNSVRLPRHVAEKRVFCGTALIEYSTEEDAAKVLQQSLVYAGVELELKPKKDFDAERAQQTEEFENSRALLGSNRKNNSNAESTYPKGLIVSFTLKRAGGSTEHNGTHEPVNDNADVGKTNTDIDSKENVTGETEDKASENINNDEENSGEDIEKESEEKVEEKTSLESEGKETEDGQKSSEGCDLKGEEKATGEQKPTAATYKDNMDVVMREDLKSVFQKFGTVKFVDFKIGEESGYIRYDEPEAAQKVRAAAVLSEEGGLTVKNYIANLEPVTGEAEREYWSLLRGNQEKHRGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKVGAA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0366 475 MobiDBLite consensus disorder prediction 427 475 - -
Vvi4g0366 475 CDD LA_like_plant 10 99 - -
Vvi4g0366 475 SMART la 8 100 IPR006630 -
Vvi4g0366 475 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Vvi4g0366 475 MobiDBLite consensus disorder prediction 241 260 - -
Vvi4g0366 475 MobiDBLite consensus disorder prediction 295 335 - -
Vvi4g0366 475 MobiDBLite consensus disorder prediction 261 285 - -
Vvi4g0366 475 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g0366 475 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g0366 475 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi4g0366 475 MobiDBLite consensus disorder prediction 241 342 - -
Vvi4g0366 475 CDD RRM1_La 117 189 - -
Vvi4g0366 475 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vvi4g0366 475 MobiDBLite consensus disorder prediction 205 225 - -
Vvi4g0366 475 Pfam RNA binding motif 351 443 IPR014886 GO:0003723
Vvi4g0366 475 MobiDBLite consensus disorder prediction 197 225 - -
Vvi4g0366 475 Gene3D - 326 443 IPR012677 -
Vvi4g0366 475 FunFam La protein 2 6 106 - -
Vvi4g0366 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 177 IPR000504 GO:0003723
Vvi4g0366 475 Coils Coil 291 311 - -
Vvi4g0366 475 Gene3D - 108 206 IPR012677 -
Vvi4g0366 475 SUPERFAMILY "Winged helix" DNA-binding domain 6 105 IPR036390 -
Vvi4g0366 475 SUPERFAMILY RNA-binding domain, RBD 107 193 IPR035979 GO:0003676
Vvi4g0366 475 PANTHER LUPUS LA PROTEIN-RELATED 11 328 IPR045180 -
Vvi4g0366 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Vvi4g0366 475 SUPERFAMILY RNA-binding domain, RBD 353 438 IPR035979 GO:0003676
Vvi4g0366 475 ProSiteProfiles xRRM domain profile. 335 455 IPR014886 GO:0003723
Vvi4g0366 475 Pfam La domain 14 84 IPR006630 -
Vvi4g0366 475 Gene3D - 2 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0366 Vvi-Chr4 3145901 3151463 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0366 K11090 - vvi:100250699 877.085