Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0363 ATGTACCAGCAATTCTCTTCACCCGCCGATCGGAGGTTGAGTGCTCTGGCCCGGCACCTGGAGGGCTCGTCCCCATCGTCCACCATGGACCCTAACCACACGATCTCTGCTTCTGCAACCTCGGGCTCCGATTTCGGTGGCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCGTTGGTGCTTATCGAACAGAGGAAGGAAAGCCTCTTGTTCTGAATGTAGTGAGACGGGCAGAGCAGCTGCTTGTTAATGACAGGTCCCGGGTCAAAGAATATCTTCCTATTGTTGGGCTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTACCGGCTCATTGAGAGTTGGAGCTGAGTTTTTGGCGAGACATCATCACCAACGAACCATATACATTCCACAACCAACATGGGGAAACCATGGAAAAATTTTCACATTAGCAGGGTTATCTGTGAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTCATGCATGCGCTCACAACCCCACTGGTGTCGACCCAACCCTTCAGCAATGGGAGCAGATAAGGCAGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTTGTTGCTGATGGTGGTGAATGCCTTGCTGCTCAGAGTTATGCCAAGAACATGGGGCTCTACGGGGAACGTGTTGGTGCACTGAGCATTGTTTGCAAGACGGCGGATGTGGCAAGCAGGGTTGAGAGCCAGGTTAAACTTGTGATCAGGCCTATGTTTTCAAACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAACACCGCTCAAGTGGCCTTCATGACCAAAGAGTACCACGTCTACATGACATCTGATGGGAGGATCAGCATGGCAGGTCTGAGCTCCAAGACAGTCCCTCATCTTGCAGATGCTATACATGCCGCCGTCACCCGTGCTATCTAA 1353 0.4952 MYQQFSSPADRRLSALARHLEGSSPSSTMDPNHTISASATSGSDFGGSVFDHVVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRAEQLLVNDRSRVKEYLPIVGLAEFNKLSAKLMFGADSPAIQVKRVTTVQCLSGTGSLRVGAEFLARHHHQRTIYIPQPTWGNHGKIFTLAGLSVKTYRYYDPATRGLNFQGLLEDLSLAPSGAIVLLHACAHNPTGVDPTLQQWEQIRQLIRLKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKTADVASRVESQVKLVIRPMFSNPPIHGASIVAIILKNRDMYNEWTVELKAMADRIISMRQQLFDALRARGTPGDWNHILKQIGMFTFTGLNTAQVAFMTKEYHVYMTSDGRISMAGLSSKTVPHLADAIHAAVTRAI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0363 450 FunFam Aspartate aminotransferase 109 350 - -
Vvi4g0363 450 PRINTS Aspartate aminotransferase signature 323 348 IPR000796 GO:0006520|GO:0008483
Vvi4g0363 450 PRINTS Aspartate aminotransferase signature 391 409 IPR000796 GO:0006520|GO:0008483
Vvi4g0363 450 PRINTS Aspartate aminotransferase signature 224 243 IPR000796 GO:0006520|GO:0008483
Vvi4g0363 450 PRINTS Aspartate aminotransferase signature 255 267 IPR000796 GO:0006520|GO:0008483
Vvi4g0363 450 FunFam Aspartate aminotransferase 340 442 - -
Vvi4g0363 450 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 293 306 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi4g0363 450 PANTHER ASPARTATE AMINOTRANSFERASE 47 448 IPR000796 GO:0006520|GO:0008483
Vvi4g0363 450 Gene3D - 109 350 IPR015421 GO:0003824
Vvi4g0363 450 CDD AAT_like 77 430 - -
Vvi4g0363 450 Pfam Aminotransferase class I and II 76 442 IPR004839 GO:0009058|GO:0030170
Vvi4g0363 450 SUPERFAMILY PLP-dependent transferases 48 448 IPR015424 -
Vvi4g0363 450 Gene3D Aspartate Aminotransferase, domain 1 53 442 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0363 Vvi-Chr4 3104486 3109035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0363 K14454 - vvi:100256163 894.419