Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0358 ATGGTGAATTCTATGGTTGAACGAGCCACGAGCGACATGTTGATCGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGGCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACGCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTAGCAGAGAGAGATATTCTTCATGAGATGGTGAAAATAGTAAAGAAAAAGCCTGATTTGCATGTCAGAGAGAAGATATTGATTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGACCAAGGGCAAGATATCCACAATACTATGCTGCATACCAGGAGTTGCTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAGAGGACAGCACCTGTATTTACCCCTCCACAAACGCAGCCTCTGACATCATTTCCTCAAAATCTTCGTAATCCAGAGTATCGGCAAGAAGGAGCTGAGTCTTCTACCGAGTCTGAGTTTCCTACCTTGAGTTTGACAGAAATTCAGAATGCACGAGGTATTATGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAGGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAAGAGAAACCCAAGACTGAACCTGTTCAAGCCCTTGTCGAAGTTGATAATCCTCTAGTTGATACAGGAGATAGCAACAAAAAGCCAGATGGCGGATCCACCTCAAGTGCTGGTGCAGGAACTCAACAAGTTCAGTTATTGCTTCCTGCCCCTCCTACAACTAATGGTCCAGCAGCAACTCCAGCAATCAACCCTAAAATGGACCTGCTGAGTGGTGATGATTATAACTCACCAAAGGCAGATAATTCATTGGCCCTTGTTCCTGTGGGAGAAGCACAGTCAAGCAGCCCTCTTTCTCAGCAAAAAGCCCTTGTTCTTGTGGACATGCTTTCTTCAAGTAATAACACCCCAAATACTTTCAATGCTCAACCAGCATATCCTGCCGGGCAATCCCCTTTGACCCCACAATTCCAACAACAGCAGAATGTTCAACCTCCACAATCCACATTTTATCCAAATGGAAGTGCCCCAAGCATGGGCTTACCTCAATACGAGCAGTCACTTGCCTGGAACGGCCAGATCGCCCAGCAGCAGCAGCCACAGTCTCCAGTCTATGGCCAGATTGGACAGCAGCAGCAGCCCCCACAGTCTCCAGTCTATGGTCAGATCTCCCAGCAGCAGCCACCATCCCCTGTCTATGGTGCTCAAAGTGGCAGCTCGCTACCACCCCCACCCTGGGAAGCTCAGCCAACTGATAATAGCCAATTAGCGGGCGCCCAATACCCTCAACCTATGCAAGTTCCCCAGGGCTTCGCTACACATGCACAGCCGATGCCAGGTAGCATGTATCCTCAAGGCCCTCAACCAATGGGAAATGACCAAGCTGCAGTTATGTATAGCCAACCAATTGCAAGTGGTCATCTCCCGGGAATTAATGCACAGGCTATTCCAAACAATCAGTTCATGGGTTTGCATTCTCAACCAATCCAAGTAGCGCAGATGGGTATGCTTCCACAGCCAATGCAAGCTGGACCAATGTCTTCTATGTATCCTCAACAAATGTATAGCAACCATATGGCAGGCTATGGATACGGATACGGTCAGCAGCAAAATCCTCAGTTCCTTGAGCACAGAATGCACGGACTCGCTGTTAGAGATGACATTGGCTTGAGGAACTCGTGGAACCAGGCTTCCACTTCATCCTATGTACCACCTATGAAGCCTCAAAAGCCAGAGGATAAGCTATTTGGAGACCTTGTTAACATGGCAAAAGTGAAGCAGGCAAAACCTACATCTGGCCGTTCTGATAGCATGTGA 2076 0.4754 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSKNPKVQLLALTLLETVVKNCGDIVHMHVAERDILHEMVKIVKKKPDLHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERTAPVFTPPQTQPLTSFPQNLRNPEYRQEGAESSTESEFPTLSLTEIQNARGIMDVLAEMLSALDPGNKEGLRQEVIMDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLAKHEAIASGTPVPKEKPKTEPVQALVEVDNPLVDTGDSNKKPDGGSTSSAGAGTQQVQLLLPAPPTTNGPAATPAINPKMDLLSGDDYNSPKADNSLALVPVGEAQSSSPLSQQKALVLVDMLSSSNNTPNTFNAQPAYPAGQSPLTPQFQQQQNVQPPQSTFYPNGSAPSMGLPQYEQSLAWNGQIAQQQQPQSPVYGQIGQQQQPPQSPVYGQISQQQPPSPVYGAQSGSSLPPPPWEAQPTDNSQLAGAQYPQPMQVPQGFATHAQPMPGSMYPQGPQPMGNDQAAVMYSQPIASGHLPGINAQAIPNNQFMGLHSQPIQVAQMGMLPQPMQAGPMSSMYPQQMYSNHMAGYGYGYGQQQNPQFLEHRMHGLAVRDDIGLRNSWNQASTSSYVPPMKPQKPEDKLFGDLVNMAKVKQAKPTSGRSDSM* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0358 691 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Vvi4g0358 691 FunFam TOM1-like protein 2 1 148 - -
Vvi4g0358 691 CDD GAT_GGA-like_plant 188 266 - -
Vvi4g0358 691 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vvi4g0358 691 MobiDBLite consensus disorder prediction 145 181 - -
Vvi4g0358 691 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Vvi4g0358 691 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Vvi4g0358 691 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Vvi4g0358 691 FunFam TOM1-like protein 2 182 272 - -
Vvi4g0358 691 CDD VHS 2 132 - -
Vvi4g0358 691 MobiDBLite consensus disorder prediction 300 323 - -
Vvi4g0358 691 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vvi4g0358 691 MobiDBLite consensus disorder prediction 388 490 - -
Vvi4g0358 691 Gene3D - 183 271 IPR038425 -
Vvi4g0358 691 MobiDBLite consensus disorder prediction 388 512 - -
Vvi4g0358 691 MobiDBLite consensus disorder prediction 288 349 - -
Vvi4g0358 691 Gene3D - 1 135 IPR008942 -
Vvi4g0358 691 PANTHER TOM1-LIKE PROTEIN 1 685 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vvi4g0358 691 SUPERFAMILY GAT-like domain 140 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0358 Vvi-Chr4 3055014 3075784 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0358 - - vvi:100249280 1302.35