Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0355 ATGCAGGCATCAAGAGCTAGGCTTTTCAAGGAATACAAAGAGGTGCAGCGGGAGAAAGCAGCAGATCCAGATATTCAACTTGTCTGTGATGATTCCAACATATTCAAATGGACTGCTCTTATCAAGGGACCATCGGAGACACCTTTTGAGGGTGGTGTTTTCCAGCTTGCTTTTGCTGTTCCTGAACAGTATCCTTTGCAACCTCCTCAAGTTCGGTTCTTAACAAAGATATTTCATCCAAATGTGCATTTTAAGACAGGAGAGATTTGCCTTGATATCTTGAAGAATGCATGGAGCCCAGCTTGGACACTCCAGTCTGTATGTAGGGCTATAATTGCTTTAATGGCTCATCCAGAGCCTGATAGCCCACTAAACTGTGATTCAGGCAATCTTCTACGATCTGGTGATATAAGAGGATACCAATCCATGGCTAGGATGTACACTAGGCTTGCGGCCATGCCCAAGAAAGGGTGA 474 0.4451 MQASRARLFKEYKEVQREKAADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0355 157 CDD UBCc 7 148 IPR000608 -
Vvi4g0355 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Vvi4g0355 157 SMART ubc_7 6 153 - -
Vvi4g0355 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Vvi4g0355 157 FunFam protein PEROXIN-4 isoform X1 1 152 - -
Vvi4g0355 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Vvi4g0355 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Vvi4g0355 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Vvi4g0355 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0355 Vvi-Chr4 3045538 3049450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0355 7 123 Miscellaneous Gene Families AT3G17000 36.585 9.46e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0355 K10689 - vvi:100254379 327.02