Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0347 ATGGCTTCCATCAGAAGAACCCTGTCTCCTGCGCCTCGAGATAGAACTCTACTAAATGGGGAAGCCTGCTCAGTACCTTCTCCCTTGTCCAAGTCATCCTCAAGTACTCAAAACTATTCACCAGAAGGCAGATTGCTGTCTCCCTCATTCAGTTCATCAGACTCTCGATTGGCGTGGTATAGAATTCAAGCTTTCATTATTGGTATTTTATCACAAAGGTCTTCTCGGCCCCTGGAGAGGTCAAAGTCAAGAGGGCACGTTTGGAGGAGAGCCCTTTTCCATTTCAGCATTTGTTTCATGGTTGGGGTTTTCACTGGGTTTACTCCTTTTGTCTCGATGAATTTATCAATGAATCTCATGTCAAAGCACCAAGCATTCTACTTTGGGTTGATTCCCCCAGTGGGGAAACTTCAGGCATATGGCTTTGTATCAAGTAAAAGAGAGATGCCATCATTAAACAGTGGAATTACAGACAATAATGTCACACTAGGGCCACAAGCAATGAAACAAGAACTTGTAAATGGGACTGCTGGTGATGTCAATACACCAACACTCATTCAGAATTCAAATTTGGTTTCTCGGAAGCTTTTGATAATTGTAACCCCAACTTATGCTCGACCTTTTCAAGCCTATTATCTAAATCGTCTGGCACACACATTAAAACAGGTTCCACCTCCTCTGTTGTGGATAGTTGTAGAGATGATGTCCCAATCTGCTGAAACAGCTGACATGTTGATGAGAACTGGTGTTATGTACAGGCATCTTATGTGCAATAAGAATTTAACTGACATCAAAGATAGAGGTGTCCACCTAAGAAACACAGCACTTTCTCACATTGAAACACACCGTCTTGATGGGACTGTTTACTTTGCAGATGATGATAATATCTACTCTGTTGATCTTTTTGAGCAAATACGGCAGATCAGGCGGTTTGGGACATGGACAGTGGCCAAATTGATGGAGAGCAAAAGCAAAACTCTATTGGAGGGTCCTGTTTGCAATGGGAGTCAAGTCATTGGTTGGCACACCAATGAAATGACCAGAAGATTCCGGAGGTTCCACACTGAAATGTCAGGGTTTGCCTTCAACAGTACAATCCTCTGGGACCCAAAGAGATGGCACCGACCTACCCTTGAGCCTATTAGACAGCTTGACACTGTCAAGGAAGGCTTCCAAGTGAGCACATTTATTGAACGACTTGTGGAGGATGAAAGCCAAATGGAAGGATTACCAGAGGGTTGCTCGACAATCATGGTTTGGCATCTTCATCTTGAATCATCTCATTCCTTCTATCCTCGTGAATGGTTGATGAAGAATAATCTAGATGTCATAGCCCAACTTGCATGA 1347 0.4321 MASIRRTLSPAPRDRTLLNGEACSVPSPLSKSSSSTQNYSPEGRLLSPSFSSSDSRLAWYRIQAFIIGILSQRSSRPLERSKSRGHVWRRALFHFSICFMVGVFTGFTPFVSMNLSMNLMSKHQAFYFGLIPPVGKLQAYGFVSSKREMPSLNSGITDNNVTLGPQAMKQELVNGTAGDVNTPTLIQNSNLVSRKLLIIVTPTYARPFQAYYLNRLAHTLKQVPPPLLWIVVEMMSQSAETADMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIERLVEDESQMEGLPEGCSTIMVWHLHLESSHSFYPREWLMKNNLDVIAQLA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0347 448 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 441 IPR029044 -
Vvi4g0347 448 CDD GlcAT-I 195 425 IPR005027 GO:0015018|GO:0016020
Vvi4g0347 448 FunFam Glycosyltransferases 196 438 - -
Vvi4g0347 448 SUPERFAMILY Nucleotide-diphospho-sugar transferases 196 440 IPR029044 -
Vvi4g0347 448 MobiDBLite consensus disorder prediction 1 43 - -
Vvi4g0347 448 MobiDBLite consensus disorder prediction 23 43 - -
Vvi4g0347 448 Pfam Glycosyltransferase family 43 216 425 IPR005027 GO:0015018|GO:0016020
Vvi4g0347 448 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 86 444 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0347 Vvi-Chr4 2958242 2970802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0347 1 444 Glycosyltransferase AT1G27600 48.874 2.98e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0347 K20869 - vvi:100257821 895.96