Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0343 ATGTCTGTGGGCTCCTGCGGAGGCTTCAAATGCCCTTCACGTCGTCTGGAAAACATCGAGGAAGATGGGCCTGCGAGTTGGCTGCCGGAGACATGTGCGCCACCAGAAACTCCCATTGAGTCCATGGAGTTTCTTGCTAGATCATGGAGCCTCTCGGCCATGGAGCTCGCTAAGGCTCTTGCAGCTGACAACCTGGACAAGTACTCCGCCTTCTGTTCGGTTGGCAATGAAGCTGAAATTCATGTTGCAAGTTCTGTGGCTTCAGAGGAAGCTATTATTCAACAATTACCAGGTGGGGGTAGCCCTCCAATTTCTCCTAGGGATAGTGATGACATGAAGGAATTATTTCTACTTCATCAGGCGCTAAACCCGGATTTCCTATCAAATCAACAGTTACTCAGAAATGGGCTATATAAAAGCATAATGAGAGGGAAAACATTTGGGAGATGGTTGAAAGATCAAAAGGAGAGGAAGAAGCAGGAGATTAGAACTCACAATGCCCAGTTGCATGCAGCAGTATCCGTTGCAGGAGTTGCTGCTGCTGTTGCGGCACTTGCTGCATCAAATGCGGCATCGCCTGAAGTCTTGGCCACCCAACACAAGAAGCCTTCCAAAACATCTGCTGCAATTGCATCTGCAGCAGCGTTAGTGGCATCCCATTGCATTGAAATTGCTGAGGACATGGGAGCTGATCATGACCACATCTTAATGGCTGTTAACTCAGCAGTTAATGCCAGGACTAATGGCGATATCATGACTCTAACAGCTGGAGCAGCTACTGCCTTACGTGGAGCTGCCACTCTAAGGGCAAGGCTGCAAAAGGGGTGCGGAACTGCAACCCTTGTTCTTTCTGAGGAACAGATTGAGGAAGGCAGAGAATCAAACATCTTGATTGCACTGAACTTTGTCTCTAGGGGAGGAGAACTTCTTAAACGCACTAGGAAAGGAGCACTCCACTGGAAGCAAGTTTCTTTCAACATAGATTCATGTTGGCAGGTGGCAGTTAAAATGAAAAGCAAGCATATGGCAGGAACATTTACAAAAAAGAAGAAATGTGTAGTCTCTGGAGTCTATTGTGACATTCCAGCATGGCCGGGGAGGGAGAGGGAAGAGAGCAGCGAGCAGAGGGCTTACTTTGGGATAAAAACAGATGACAGGATAATAGAATTTGAATGCAGAAATAACAGTGATAAACAAATGTGGGCTGAAGGGATCCAGTATATGTTGCACTGCCGGGCTAGCATGATATGA 1251 0.4724 MSVGSCGGFKCPSRRLENIEEDGPASWLPETCAPPETPIESMEFLARSWSLSAMELAKALAADNLDKYSAFCSVGNEAEIHVASSVASEEAIIQQLPGGGSPPISPRDSDDMKELFLLHQALNPDFLSNQQLLRNGLYKSIMRGKTFGRWLKDQKERKKQEIRTHNAQLHAAVSVAGVAAAVAALAASNAASPEVLATQHKKPSKTSAAIASAAALVASHCIEIAEDMGADHDHILMAVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGCGTATLVLSEEQIEEGRESNILIALNFVSRGGELLKRTRKGALHWKQVSFNIDSCWQVAVKMKSKHMAGTFTKKKKCVVSGVYCDIPAWPGREREESSEQRAYFGIKTDDRIIEFECRNNSDKQMWAEGIQYMLHCRASMI* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0343 416 PANTHER EXPRESSED PROTEIN 26 413 IPR040269 -
Vvi4g0343 416 Pfam Plant pleckstrin homology-like region 308 412 IPR013666 -
Vvi4g0343 416 Pfam Auxin canalisation 35 283 IPR008546 -
Vvi4g0343 416 SMART PH_update 303 412 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0343 Vvi-Chr4 2917397 2919704 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0343 - - vvi:100261152 758.444