Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0340 ATGGAATTCTATGGCAAGAGAAGTCTTTCTAGCTACATGGATGAAGAGAGGAAGGCAATTAATCAATCTCCAAATCGTGCCCCTCTCAGAACCCATCAACAAATTTCAGAACAAGACCTCCATTTAAGCCCTACAAGGTCTAGGATGACGTTAATGCCACCTCCAAGTCCAGAGTCACCATGGACGCTCTCTCCTCTCCATACTCCTTCCCCTTCTCTCCTTTACCACTGCATCGCCTCCCTTCACCGCCATGAAGGTAACATATACTCCATCGCTGTTTCCAGAGGGCTTGTCTTCACTGGCTCTGAGAGCAGCCGGGTTCGTGTATGGAGGCAACCTGACTGCATTGAGAGAGGGTATTTGAAGGCCAGCTCCGGTGAAGTCCGAGCCATCTTGGGTTATGGTAACATGCTCTTCACCACTCATAGAGACAACAAAATCCGGATGTGGAATGTCACAAATTCGGATAGTTTTCGGTCCAAGAAGGTCTCAACCCTGCCTAGAAGAAGCTCATTGTTTATTTTCCCAAGGGCAAGTCCTCAAAAGCACAAGGATTGTATTTCTTGCATGGCTTATTACCATGCAGAAGGGCTTTTATACACAGGCTCCTGGGACAGAACAGTAAAGGCATGGCGAGTTTCCGATAAGCAGTGTGTGGACTCATTTGTGGCTCATGAAGATAATGTTAATGCCATAGTGGTAAACCAGGAGGATGGTTGTCTATTTACTTGTTCTTCTGATGGATCAGTGAAGGTATGGAGGAGATTATATGTAGAGAGCTCTCATACTCTCACAATGACTCTCAAATTCCAACCCTCACCGGTAAATGCATTGGCCCTAAGCTTGTCTCTCAACACTTGCTTCCTCTACTCAGGATCCTCAGATGGGTTTATAAATTTCTGGGAGAAGGAGAAAATGTCCGGGAGGTTCAACCATGGAGGATTCCTGCAAGGTCACCGGTTCGCCGTTCTTTGTTTAGTAGCAGTGGAGAAGTTAGTATTCAGTGGCTCTGAGGATACTACAATCAGGGTTTGGAGGAGAGAAGAAGGAAGCTGCTATCATGAGTGTCTTGCAGTGTTGGATGGACATAGAGGGCCAGTGAGATGCCTAGCTGCTTGTTTGGAGATGGAGAAAGTTGTGATGGGGTTCTTGGTCTATAGTGCAAGCTTGGACCAAACTTTCAAGGTATGGAGAATTAGGGTCTTACCAGATGATCAGAAGAAGATGTGCTTGGATGAAAGCAACCGGAGCGATAGTTTGAAGGCGAAGATAATGGAGTATGAGATGAGTCCTGTGTTGTCTCCTTCATGGGTGGAGAAAAAGCTTCAAAGTAGCCATTTTCAGTAG 1347 0.461 MEFYGKRSLSSYMDEERKAINQSPNRAPLRTHQQISEQDLHLSPTRSRMTLMPPPSPESPWTLSPLHTPSPSLLYHCIASLHRHEGNIYSIAVSRGLVFTGSESSRVRVWRQPDCIERGYLKASSGEVRAILGYGNMLFTTHRDNKIRMWNVTNSDSFRSKKVSTLPRRSSLFIFPRASPQKHKDCISCMAYYHAEGLLYTGSWDRTVKAWRVSDKQCVDSFVAHEDNVNAIVVNQEDGCLFTCSSDGSVKVWRRLYVESSHTLTMTLKFQPSPVNALALSLSLNTCFLYSGSSDGFINFWEKEKMSGRFNHGGFLQGHRFAVLCLVAVEKLVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIRVLPDDQKKMCLDESNRSDSLKAKIMEYEMSPVLSPSWVEKKLQSSHFQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0340 448 Gene3D - 53 162 IPR015943 GO:0005515
Vvi4g0340 448 SMART WD40_4 74 111 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 168 212 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 309 346 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 353 398 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 215 254 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 261 302 IPR001680 GO:0005515
Vvi4g0340 448 SMART WD40_4 114 151 IPR001680 GO:0005515
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 160 IPR001680 GO:0005515
Vvi4g0340 448 Gene3D - 164 437 IPR015943 GO:0005515
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 110 IPR001680 GO:0005515
Vvi4g0340 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 401 IPR045182 -
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 355 IPR001680 GO:0005515
Vvi4g0340 448 Pfam WD domain, G-beta repeat 315 345 IPR001680 GO:0005515
Vvi4g0340 448 Pfam WD domain, G-beta repeat 355 397 IPR001680 GO:0005515
Vvi4g0340 448 Pfam WD domain, G-beta repeat 182 211 IPR001680 GO:0005515
Vvi4g0340 448 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Vvi4g0340 448 SUPERFAMILY WD40 repeat-like 76 399 IPR036322 GO:0005515
Vvi4g0340 448 MobiDBLite consensus disorder prediction 24 45 - -
Vvi4g0340 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Vvi4g0340 448 MobiDBLite consensus disorder prediction 1 62 - -
Vvi4g0340 448 CDD WD40 77 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0340 Vvi-Chr4 2897025 2898371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0340 138 398 Acyl Lipid Metabolism Gene Families AT3G18860 27.273 1.20e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0340 - - vvi:100266358 904.434