Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0339 ATGGACAGACGCCTCTTCGAGGCAGTTCTCAAAGGCGACGTTTCATCCTTCCTCTCTCTCGCTCAAGAAGAGGAAGATATCATCAAACAAGTCGTCCCCGGCTCCCTGAACACTGTCTTACACTTAGCAGCGCGGTTTGGGCACTTGGAATTGGCGTCGGAGATAGTGAATCTAAGGCCCGAATTGTCGTCGGCCGAGAATGAAAAACTGGAGACTCCTTTGCATGAAGCATGTAGAGAGGGGAGAGTGGAGATTGTGGCGCTTTTGATGAAGGTAGATCAATGGATTGCTCCAAAGGTTAACCGGAACGACGAGAGCGTGCTGTTTGTGGGGTGCGAGAGAGGGAAGCTTGATGTGGTGAAGCATCTTTTGGTGAACCATTCATGGCTGTTGATGCTGGAATTGGATGCTCCCACCACTTCACTTCATGCTGCAGCTTCAGGAGGCCATACAGATGTAGTTAAGGAGATAATAAGGGAAAGGCCAGACTTTTCATGGAAGAAGGATTCTCAAGGATGTACTCCCTTGCACCTAGCTTGCAGCAAAGGTCACCTTGAGATCACAAGGGAGCTTCTGAGGTTAGACCCAGACCTCACTTCCTTACAGGACAATGATGGTCGAACACCTCTCCACTGGGCGGCCATGAAAGGGCGTGTCAACATCATTGACGAGATCCTCTCTGTCAGTCTCCAATCAGCAGAGATGAGAACCGAACATGGTGAGACTGTTTTACACCTGGCAGTGAAGAACAACCAGTATGAAGCTGTCAAGTACTTGACAGAGACTCTCAACATCTCCCAGCTCCTCAACACGCCGGATAGTGATGGCAATACCATCTTGCATCTCGCCACTGCCGGAAAACTCACCACTACGGTCCTCTATCTTCTCAAGCTGGGTGTCAATGTAAATGCTCTAAACCGCAAGGGTTACACCCCTCTAGATGTAGTTGAAACGGATGCCAGTAACTCTGGCTCGCTTGTGGTTGTGCCTGCATTACTGGAAGCGGGAGCTAAGAGGTGTGACCAATTACCGCCGGTTTCTCAAGAAATTCAAACCATTACTGAACCCTCGTCAGGAAGATTATACCCCACCAGCCCAAATTTACCACCTCCATGGCCAAAAAGGCCCCCGGAATCTCCAGCCAAGCATCACCGTCGCAAGCACCAGAGGCGCCGGGAAAAGCAGCTTGAGCAACAGACCGAGGGTCTCCGCAATGCTAGAAACACTATCACAGTTGTGGCTGTCTTAATAGCAACTGTGACATTCTCTGCAGGCGTAAACCCCCCCGGTGGCTTCAACCAGAGCTCCGGCAAGGCCATAATGGGTAAAAAGACTCCTTTCAAGGTATTCATGGTATGCAACATTCTAGCATTGTTCCTGTCCCTAGGCATAGTCATCGTTCTTGTCAGCATCATCCCTTTCCGGCGGAAATCCATGATGAAGCTCTTGATTTCAACTCATAAGGTGATGTGGATGTCGGTGACTTTTATGGCGGCGGCTTATATAGCTGCGACATGGACAATTCTGCCAGGAGGACCGAGTACCAAGTGGGTGTTGGTGACATTGGTTTCCATAGGGGGTGGGTGCACAATGACCATATGTGTAGGCCTAGGAGTTTTGCTAATACAGCATTGGCTTAGAAAATGGGAATGGAAGAAAACCAAAAGAAAGAACAAGGATGGAAGCCCCCATAGTAGTATGAATAGTCGTGTAGGAGAGATGCAAACGATCAAGAGGGGTGATCATGATTCGACTAGTAACTCCGACGTTGATAGCTCTGAGAAAGGGGGTTACCACCTCTATTAG 1806 0.4928 MDRRLFEAVLKGDVSSFLSLAQEEEDIIKQVVPGSLNTVLHLAARFGHLELASEIVNLRPELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNRNDESVLFVGCERGKLDVVKHLLVNHSWLLMLELDAPTTSLHAAASGGHTDVVKEIIRERPDFSWKKDSQGCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTTVLYLLKLGVNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVSQEIQTITEPSSGRLYPTSPNLPPPWPKRPPESPAKHHRRKHQRRREKQLEQQTEGLRNARNTITVVAVLIATVTFSAGVNPPGGFNQSSGKAIMGKKTPFKVFMVCNILALFLSLGIVIVLVSIIPFRRKSMMKLLISTHKVMWMSVTFMAAAYIAATWTILPGGPSTKWVLVTLVSIGGGCTMTICVGLGVLLIQHWLRKWEWKKTKRKNKDGSPHSSMNSRVGEMQTIKRGDHDSTSNSDVDSSEKGGYHLY* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Vvi4g0339 601 SUPERFAMILY Ankyrin repeat 99 336 IPR036770 -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat region circular profile. 275 307 - -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat profile. 205 227 IPR002110 GO:0005515
Vvi4g0339 601 Gene3D - 2 347 IPR036770 -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat profile. 275 307 IPR002110 GO:0005515
Vvi4g0339 601 MobiDBLite consensus disorder prediction 353 402 - -
Vvi4g0339 601 SUPERFAMILY Ankyrin repeat 5 127 IPR036770 -
Vvi4g0339 601 PRINTS Ankyrin repeat signature 291 305 IPR002110 GO:0005515
Vvi4g0339 601 PRINTS Ankyrin repeat signature 172 187 IPR002110 GO:0005515
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat profile. 239 261 IPR002110 GO:0005515
Vvi4g0339 601 MobiDBLite consensus disorder prediction 575 589 - -
Vvi4g0339 601 Pfam Ankyrin repeats (3 copies) 233 304 IPR002110 GO:0005515
Vvi4g0339 601 Pfam Ankyrin repeats (3 copies) 26 91 IPR002110 GO:0005515
Vvi4g0339 601 Pfam Ankyrin repeats (3 copies) 142 226 IPR002110 GO:0005515
Vvi4g0339 601 Coils Coil 386 406 - -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat region circular profile. 239 261 - -
Vvi4g0339 601 FunFam Uncharacterized protein 2 151 - -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat region circular profile. 171 198 - -
Vvi4g0339 601 Pfam Domain of unknown function 401 507 IPR026961 -
Vvi4g0339 601 ProSiteProfiles Ankyrin repeat region circular profile. 205 227 - -
Vvi4g0339 601 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 171 200 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 205 235 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 239 267 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 308 342 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 137 166 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 275 304 IPR002110 GO:0005515
Vvi4g0339 601 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vvi4g0339 601 MobiDBLite consensus disorder prediction 556 601 - -
Vvi4g0339 601 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 66 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0339 Vvi-Chr4 2889551 2892122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0339 5 601 Miscellaneous Gene Families AT1G10340 33.762 9.34e-97 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0339 - - vvi:100244024 1122.07