Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0337 ATGAAGGATTTGCTGAAAACATCATTGAGAGCTGATGTTTCCAAAACCATCAAAAACACCTCTCAGAGGATTTTGGATGCATTTGTGGATTCTGTATTTCAATTTGTTGATCAACCATTACTCCCATCTCAGAAAAATTTTGCACCAGTTGAAGAAATTGGAGAAGATGTTGAGGTAATTTGCAATGAAGGGAATGTTCCAGCGGATTTCCCTGAGGGTATTTACATAAGAAATGGCCCAAATCCTCTATTTGGAGGTCTGAAATCGACTGTTTCGGTTTTCGGAAGAACAAGCCATATATGGATAGAAGGAGAAGGAATGCTTCACGCATTATACTTTATGAAGAATGCTCATGGAGATTGGTCCATCTCCTATAAAAACAGATATGTTGAATCTGAAACATTCAAAATTGAGAAACAAGGAAACAAGCCAGCTTTCGTTCCTACAATTGAAGGAGATTCTCCAGCTATCTTAGCAGCTGCTCTTCTGAACATGTTGAGATTTGGCATGGTCAGTAAGCAAATCAGCAACACAAGCATTTTTGAGCATTCAGGGAAGTTCTATGCTAGTGCAGAGAACCACCTGCCTCAAGAGATTGACATATTTACTCTGGAGACATTTGATAAGGGGGATGTTAATGGAGCTTGGGATCGAGCTTTCACTAGCCATCCAAAGAAAGATCCAAGAAATGGGGAACTAGTAATAATGGGGATAGATGCAGTAAAGCCCTTTTTTGTTGTTGGAGTTGTCTCTGAGGATGGAAAGAAACTATCCCATAAGGTTGATCTCAAGTTTGATAGGGCTACTCTCATCCATGAATTAGGGATTACAGAGAAGTACACTGTAATCATGGATTTTCCCCTCACCATAGACATAAATAGACTAATCAATGGAGGCCCATTAATTAAGTATGACAAGGAAGGCTATGCGAGGATTGGTGTGATGCCCCGCTATGGCAATGCAGATTCAGTCCAGTGGTTTGAGGTAGAAAAGCATTGCCTATTCCATAATTTCAATAGCTTTGAGGATGGTAATGAGGTTGTAATAAGGGGATGTAGATCTCCTGCAGCCTTCATACCAGGCCCTGATAATGGTCTAAATAAATTTGAGTGGTTCTCAAAGGGACTTAAACCTATAGAGACATTTAAAGAAAGTTCTACTGGTTCAACACAAGAGGGATTCCTTTTTGCTCGAGTCTGTGAATGGAGATTAAACATGGAAACTGGAGAGGTGAAGGAGAGAAACCTCACTGGCACTGACTTCCCCATGGACTTCCCGATGATAAATGAACATTTCAGAGGTGTTAAACAAAAGTATGGTTACACCCAAGTTCGCGATTGCATGGCAAGCTCTAGTTGTGGGATGAGTAAATATGGAAGTCTAGCAAAACTATACTTTGAAGAATCAGACTCCAAGCTATCTGTGAAAGAGGGAAAGGGTGAGCATCTAATAAAGGTCGAGTACAATAGGTTTGCAGAAAACAACTTCTGCTCTGGAAGTGTCTTTGTGCCTAAAGGTGGAAGTTCAGAAGAAGATGATAGTTGGATTGTCTCTTTTGTTCATAATGAAGATACGGATGTTTCTCAGGTTCATATCATTGATGCACAGAAGTTCAGCAGTAAGCCAATTGCGAAAATTACACTGCCACAAAGAGTACCGTATGGTTTTCATGGAATTTTCATAACAATGCCCCATCAAGCTTAA 1704 0.4014 MKDLLKTSLRADVSKTIKNTSQRILDAFVDSVFQFVDQPLLPSQKNFAPVEEIGEDVEVICNEGNVPADFPEGIYIRNGPNPLFGGLKSTVSVFGRTSHIWIEGEGMLHALYFMKNAHGDWSISYKNRYVESETFKIEKQGNKPAFVPTIEGDSPAILAAALLNMLRFGMVSKQISNTSIFEHSGKFYASAENHLPQEIDIFTLETFDKGDVNGAWDRAFTSHPKKDPRNGELVIMGIDAVKPFFVVGVVSEDGKKLSHKVDLKFDRATLIHELGITEKYTVIMDFPLTIDINRLINGGPLIKYDKEGYARIGVMPRYGNADSVQWFEVEKHCLFHNFNSFEDGNEVVIRGCRSPAAFIPGPDNGLNKFEWFSKGLKPIETFKESSTGSTQEGFLFARVCEWRLNMETGEVKERNLTGTDFPMDFPMINEHFRGVKQKYGYTQVRDCMASSSCGMSKYGSLAKLYFEESDSKLSVKEGKGEHLIKVEYNRFAENNFCSGSVFVPKGGSSEEDDSWIVSFVHNEDTDVSQVHIIDAQKFSSKPIAKITLPQRVPYGFHGIFITMPHQA* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0337 567 Pfam Retinal pigment epithelial membrane protein 48 561 IPR004294 GO:0016702
Vvi4g0337 567 PANTHER BETA-CAROTENE DIOXYGENASE 57 562 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0337 Vvi-Chr4 2883265 2886368 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0337 - - vvi:100254294 1161.36