Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0336 ATGGACAGACGCCTCGTCGAGGCAGTTCTCAAAGGCGACGTTTCAACCTTCCTCTCTCTCGCTCAAGAAGAGGAAGATATCATCAAACAAGTCGTCTCCGGCTCCCTGAACACTGTCTTACACTTAGCAGCGCGGTTTGGGCACTTGGAATTGGCGTCGGAGATAGTGAATCTAAGGCCTGAATTGGCGTCGGCCGAGAATGAAAAGCTGGAGACTCCTTTGCATGAAGCATGTAGAGAGGGGAGAGTGGAGATTGTGGCGCTTTTGATGGAGGTAGATCCATGGATTGCTCCAAAGGTTAACCGGAACGACGAGAGCGTGCTGTTTGTGGGGTGCGAGAGAGGGAAGCTTGATGTGGTGAAGCATCTTTTGGTGAACCATTCATGGCTGTTGATGCTGGAATTGGATGCTCCCACCATTTCACTTCATGCTGCAGCTTCAGGAGGCCATACAGTTAAGGAGACAATAAGGGAAAGGCCAGACTTTTCATGGAAGAAGGGTTCTCAATGA 510 0.502 MDRRLVEAVLKGDVSTFLSLAQEEEDIIKQVVSGSLNTVLHLAARFGHLELASEIVNLRPELASAENEKLETPLHEACREGRVEIVALLMEVDPWIAPKVNRNDESVLFVGCERGKLDVVKHLLVNHSWLLMLELDAPTISLHAAASGGHTVKETIRERPDFSWKKGSQ* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0336 169 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 8 161 - -
Vvi4g0336 169 ProSiteProfiles Ankyrin repeat region circular profile. 69 91 - -
Vvi4g0336 169 Gene3D - 1 165 IPR036770 -
Vvi4g0336 169 Pfam Ankyrin repeats (3 copies) 25 91 IPR002110 GO:0005515
Vvi4g0336 169 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vvi4g0336 169 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vvi4g0336 169 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vvi4g0336 169 FunFam Uncharacterized protein 2 151 - -
Vvi4g0336 169 ProSiteProfiles Ankyrin repeat profile. 69 91 IPR002110 GO:0005515
Vvi4g0336 169 SUPERFAMILY Ankyrin repeat 5 150 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0336 Vvi-Chr4 2881184 2881879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0336 5 121 Miscellaneous Gene Families AT1G10340 35.294 3.91e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0336 - - vvi:100257768 329.717