Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0334 ATGAGGGACCAATATGCCCTAATATCATGGCAAAAACCAAAGGGCTTGAATTTGTCTAATAGAAGAAGAAGACTTGATCCAGAGATGGCATCCTTTTCGTTTGCTTTACAAGTCAATGGGCTCTTTCATAATCATTCTATCTCTCACAGCTTTGATCATCTCAAGACCTTTCTCTCCTCTGCTGTAAAGAAAATATCAGTGAGAACTGACATTGCAAAAACCCTCAAAAACACTTCTAATAGAATGTTGGATGCATTTGTGGATTCTACATTTCAATTTGTCAGTCAACCCTTACTCCCATCTCAGAAAAACTTCGCACCAGTGGAAGAAATTGGAGAAGCTGTTCAGGTTGTTTGTATTGAAGGGATTATTCCAGTAGATTTTCGAGCCGGTGTTTACATAAGAAATGGTTCAAATCCTCTATTTGGAGGACTAAAATATACAATTTCAATTTTTGGAAGATCAAGCCATATATGGGTAGAAGGAGAAGGAATGCTTCATGCCATATATTTTATGAAGGATGCTCATGGAGATTGGATCATCTCCTACAAAAACAGATATGTTGAGTCTGAGACATTCAAGCTGGAGAAACAAAGAAACAAGCCATCCTTCCTTCCTACTGTTGAAGGAGATTCTCCAGCTATCATAGCAGCTTATCTTTTGAACATGTTGAGATTTGGAATGGTTAATAAACAAATCAGCAGCACAAGTATTTTTGAGCATTCAAGGAAGTTCTATGCAATCACAGAGAACCATCTGCCTCAAGAGATTGACATATTTACTCTGGAGACCTTGGAGGAGTGGGATGTCAATGGAGCTTGGGATCGGCCTTTCACTAGCCATCCAAAGAAAGCTCCAGGAACTGGGGAACTAGTTACCATTGGGATGGATGGACAGAAGCCTTTTATTGTGGCAGGAGTTATTTCTGCGGATGGAAATATGCTATCTCATAAAGTTGACCTCAAGTTTAATAGAGCTACTCTAATCCATGAAATAGGAGTTACACAGAAGTATAATGTAATCATGGATTGTCCTCTTACAGTAGACATGAACAGACTAGTTGCAGGAGGCCCATTAATCAAGTATGATAAGGAAGGCTATACAAGGATTGGGGTCATGCCTCGTTATGGAAATGCAGATTCAGTTAAGTGGTTTGATGTAGAAGCAAATTGCACACTTCATATTCTCAATAGCTTTGAGGACGGAAATGAGGTAGTAGTAAGGGGGTGTAGAGCTCTTGAATCCATCATACCTGGCCCTGATCAAGGTCTAAATAAATTTGAGTGGTTTTCAATGGGATTTAAACCTATAGAGATATCTAACAAAAATTCTAATGGTTTCACACAAGAGGGTTTCCTTTTTGCTCGAGTGTATGAATGGAGACTAAACATGGAAACTGGGGAGGTTAAGGAGAGAAATCTCACTGGGACAGATGTCTCCATGGAATTTCCTATGATCAATGAAGATTTTACAGGTGTTAAACACAAGTATGGTTACACCCAAGTCCTAGATTCCATGGCAAGCTCAAGCTGCGGCATGGCCAAATATGGAGGTCTAGCAAAATTGTACTTTGAAGAACAAGACAAGACACTACCTGCAAGGGATGGAAAGAAGGGGCAGCTGATAAAGGTGGAGTACCATAGATTTGAGGAAAACAACTTCTGCAGTGGAAGTGCCTTTGTCCCAAAACAGGGAGGTGTTGAAGAAGATGATGGTTGGATCATCTCTTTTGTTCACAATGAAGATACCAACATATCTCAAGTTCATATAATTGATGCAAGAAAGTTTGACAGCAAGCCAGTTGCAAAAATCACACTGCCTCAAAGGGTGCCATATGGCTTTCATGGAACCTTCATACCAATGCCCGGACAAGCTTAG 1878 0.4004 MRDQYALISWQKPKGLNLSNRRRRLDPEMASFSFALQVNGLFHNHSISHSFDHLKTFLSSAVKKISVRTDIAKTLKNTSNRMLDAFVDSTFQFVSQPLLPSQKNFAPVEEIGEAVQVVCIEGIIPVDFRAGVYIRNGSNPLFGGLKYTISIFGRSSHIWVEGEGMLHAIYFMKDAHGDWIISYKNRYVESETFKLEKQRNKPSFLPTVEGDSPAIIAAYLLNMLRFGMVNKQISSTSIFEHSRKFYAITENHLPQEIDIFTLETLEEWDVNGAWDRPFTSHPKKAPGTGELVTIGMDGQKPFIVAGVISADGNMLSHKVDLKFNRATLIHEIGVTQKYNVIMDCPLTVDMNRLVAGGPLIKYDKEGYTRIGVMPRYGNADSVKWFDVEANCTLHILNSFEDGNEVVVRGCRALESIIPGPDQGLNKFEWFSMGFKPIEISNKNSNGFTQEGFLFARVYEWRLNMETGEVKERNLTGTDVSMEFPMINEDFTGVKHKYGYTQVLDSMASSSCGMAKYGGLAKLYFEEQDKTLPARDGKKGQLIKVEYHRFEENNFCSGSAFVPKQGGVEEDDGWIISFVHNEDTNISQVHIIDARKFDSKPVAKITLPQRVPYGFHGTFIPMPGQA* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0334 625 PANTHER BETA-CAROTENE DIOXYGENASE 108 619 IPR004294 GO:0016702
Vvi4g0334 625 Pfam Retinal pigment epithelial membrane protein 106 620 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0334 Vvi-Chr4 2873739 2878007 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0334 - - vvi:100242297 1276.92