Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0330 ATGAGTATGGAAATAGGTAGAGATGATGGCCGCACAGCAAATCAGCTGAGACCACTAGCTTGTTCTCGCAACATCCTCAATCGTGCTCATGGCTCTGCAAGTTGGTCTCAAGGAGATACCAAAGTTCTTGCAGCTGTTTATGGCCCAAAAGCAGGAACAAAAAAGAATGAAAACCCTGAGAAGGCTTGTATTGAAGTCGTTTGGAAACCCAAGACAGGGCAGATTGGGAAACCAGAAAAGGAGTATGAGGTGATACTGAAGAGGACTTTGAAAAGCATCTGCCTTTTGAATATCAATCCAAATACCACAACCTCAATTATAATTCAGGTTGTCAGTGATGATGGTGCTCTTCTGCCATGTGCCATAAATGCGGCATGTGCAGCCCTTGTAGATGCTGCAATTCCTCTCAAGCATCTTGCTGTTGCAATATGTTGCTGTCTGACAGAAAGCGGATATGTTATACTAGACCCAACCAAGGTAGAAGAGCAGAAAATGAAGGCATTTGCATACTTAGTCTTCCCCAATTCAGCGATCTCAATCATTCCAGAAGGATCGTCACACATGGAAGGGGAGCTGATGGAACATGGGATCATCACATCTGTTACACATGGAGTAATGTCAGTGGATGATTATCTTCACTGTCTTGAACGAGGACAGGCTGCAAGCACAAAGATGTCAGCTTTTCTAAGGAGAAGCTTGCAATCACAAGCCCCAAATGACTCATCTAGGGCTGGATGA 738 0.4431 MSMEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPNDSSRAG* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0330 245 SUPERFAMILY Ribonuclease PH domain 2-like 135 236 IPR036345 -
Vvi4g0330 245 FunFam Exosome complex exonuclease RRP46 homolog 3 241 - -
Vvi4g0330 245 CDD RNase_PH_RRP46 16 230 - -
Vvi4g0330 245 SUPERFAMILY Ribosomal protein S5 domain 2-like 9 135 IPR020568 -
Vvi4g0330 245 Gene3D - 4 243 IPR027408 -
Vvi4g0330 245 Pfam 3' exoribonuclease family, domain 1 15 135 IPR001247 -
Vvi4g0330 245 PANTHER EXOSOME COMPLEX COMPONENT 4 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0330 Vvi-Chr4 2849041 2855090 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0330 K12590 - vvi:100262803 482.641