Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0322 ATGGAAAAACTAGGTGACGATGAACTGGGTTTGATAATCAACTGGGTTCATGATCATAATGACAGAAGATCAATTTCTCAAGTATGCAAGCAATGGTTACGGGTAGAGGGTCAAACCCGGTTATATATACGTGTTCTAGAAGCTGAAGTTCTCCATAATTTCTTACCAAGGTTCCCAAATTTAGTGACATTCCAAGCCTCAGGATTAATCTGCAACGCCCACCTCGAATGTGTTGCCCAAACATGTCCCAAGATCGAGGTTCTCAACCTAAATACTCGAAAAATGCATGATGATTTGGATGAATCTGATGAGTTATCAGGCTTAAATGGTGGTATACATGCAATTGCAAATGGGTGTCGGGAATTACGGAAGGTTTATTTGAGAAGAAGGGGGATTGGTAATTTTGGGGTTGTTTCTCTTCTGAACTTTGGAAAAAACCTGACAGAGTTGGATTTGGGACGATGCAATAGAATTACTGATCAAGCTCTTGAAGCCATTGGGTATGCAACTTCTCTCTGTGTCTTGAATCTGCGGTGTTGTTGGTTGATCACGGATTCAGGGTTGGCGATGTTGGCAAATGGGTCTACAGCCAGGACTCTGAAAAAACTGATTATTGCAGAATGTGAGCGCATCACAGACTATGGGCTGTCGTGTTTGCAGCAGATGTGCTGTTTGGAGGAGTTGAATCTGGCAGAATGTGGACCGGCGGTGACTGACATCGGAGGTGTGGCAGTCGCTTCAATTCCTACTCTCAAGTGGTTGAACTTGTCGTGGTTGATAAACATATCGGACGTTACTCTGACCGCCATTGCTGAGCATTCCCAGAAGTTAATGGTGCTTGATTTAACAGGCTGTGAATTAATCACGGGAGAAGGGGTTCGTGCGTTTGTAGATCATGAATCCCTGGAAGAGCTTGTGCTGGTTTCCTGTGTCAATGTTTTTCAGTCTGATGTGGAACTTCTGGTTCTGGGGAGCCAGTCCCTGAAGTACATCAAGCTAGATAAACGTCTCAGAATGTGGATTCCGATTGCTACACAAGAGAATATCAGCAGATTCTGTAGGTTGGATTGGACTTCCTGA 1080 0.4407 MEKLGDDELGLIINWVHDHNDRRSISQVCKQWLRVEGQTRLYIRVLEAEVLHNFLPRFPNLVTFQASGLICNAHLECVAQTCPKIEVLNLNTRKMHDDLDESDELSGLNGGIHAIANGCRELRKVYLRRRGIGNFGVVSLLNFGKNLTELDLGRCNRITDQALEAIGYATSLCVLNLRCCWLITDSGLAMLANGSTARTLKKLIIAECERITDYGLSCLQQMCCLEELNLAECGPAVTDIGGVAVASIPTLKWLNLSWLINISDVTLTAIAEHSQKLMVLDLTGCELITGEGVRAFVDHESLEELVLVSCVNVFQSDVELLVLGSQSLKYIKLDKRLRMWIPIATQENISRFCRLDWTS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0322 359 PANTHER UNCHARACTERIZED 20 320 - -
Vvi4g0322 359 Gene3D Ribonuclease Inhibitor 98 181 IPR032675 -
Vvi4g0322 359 FunFam F-box/LRR-repeat protein 4 1 40 - -
Vvi4g0322 359 CDD F-box_AtTIR1-like 1 40 - -
Vvi4g0322 359 SUPERFAMILY RNI-like 78 334 - -
Vvi4g0322 359 Gene3D Ribonuclease Inhibitor 183 351 IPR032675 -
Vvi4g0322 359 Gene3D - 1 40 - -
Vvi4g0322 359 Pfam Leucine Rich repeat 146 166 IPR001611 GO:0005515
Vvi4g0322 359 Pfam Leucine Rich repeat 273 296 IPR001611 GO:0005515
Vvi4g0322 359 Pfam Leucine Rich repeat 170 192 IPR001611 GO:0005515
Vvi4g0322 359 Pfam F-box 4 40 IPR041567 -
Vvi4g0322 359 SMART LRR_CC_2 144 169 IPR006553 -
Vvi4g0322 359 SMART LRR_CC_2 248 273 IPR006553 -
Vvi4g0322 359 SMART LRR_CC_2 274 299 IPR006553 -
Vvi4g0322 359 SMART LRR_CC_2 197 222 IPR006553 -
Vvi4g0322 359 SMART LRR_CC_2 170 194 IPR006553 -
Vvi4g0322 359 SMART LRR_CC_2 119 143 IPR006553 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0322 K10268 - vvi:100854453 721.079