Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g0318 | ATGGATGGCCAACTTGGTTTCAGTGATGACAATTGTTTAGTCCCCCACTTGTTAGAGCTGTTCCTTGGGTTGGGCTCTCTTGGTTCTCTGACAGATGAGTCAGATACGAAGAATAAAACACCATTGAAGGTTAATGCTGTCAAAGCTGGTGGAATGATGTCACTGGCAATTGATAATCTTGGGGGCCTCTGGATGTGGGGCAATGTCCCTGAAAGCAGTCCCGATAAAGGGGAATTCTCTCTTGTTAGCAGTTTCACTCCAATTCCTGTCTGGGACTTTCATGGCCACACTGTTGTGAAGGTGGCATGTGGAAATGAGCATGTTGTAGCCCTAGTTAGTCATGGGGAAACATATAAAGGTGGGGATCTCATTTGCTACTCTTGGGGTAACAACGGCCATGGCCAGTTAGGTCTTGGAGATACAGAGAACAGGTTACGTCCCGAAGTGGTAAAAACTTTCAACCTCGAATCCTTATGGGAAGTTTATGAGGTAGCATGTGGAGCCTTCCACACAGCCCTGCTCACTCACAAAAAGAGACCAAGTGACACATTAGAAAGTATGTGCTGGACATTTGGTCTAGGGGATAATGGGCAACTTGGGCATGGAACCACAAAAGGTATTTCGTTGCCCGAGCCTGTAAAAGACTTGCCAGAACATAGATTCCTGGTTTCTGTTGACTGTGGCTTATTTCACACTAGTGTAGTATCATCGGCCGGAGAGGTGTGGTCATGGGGGATGGAAAAGGGCCTTGGCTTATGCCCAGATGCTAGTTTCACTGGAACAGATCCTGGGGATGCTCCTTCTCCACTTTTGTATGGATCAAAATTTCGGGATCCAGTTCAAGTTGCATGTGGAGCTGCCCATACTGTTCTTGTTGCAGATGATGGATATAAGCTTTGGTCTTGGGGCAGGGGAAGGAGTGGGGTTCTGGGAAATGGTAAGACAGTGGATTGTTTTGCTCCTAGTACTGTATTATGGCCCCCACTCACTGAGGATTTCAAGGAGTTGGAATCGGGGACTACAAGTGGGGAGAAAAAGATTGAGAACAAGGATCCTGAAGAAGTCACCGAGATGGAGAAAAGATTGTCTTTGGCAACAGAGGAAATGAAGCTCCTTCACTCAAAACTGTCTACAATGGAAAGATATGCAAGCATACTTCATGGCTCAATTTTTGGAAAACCTTTTGAAGAACAGGATATTCCAATCTCATTGCAGAATTCAGGCTTTTTTGACATTGCAAAGGAATGGGAGAACATGTTGGAGTCAGCTGATCGTGGTAAGCTTGTGATGTTGGAAAAGTTTTACCGAAACATGCTTGCTGGTGTTAAAGATAAGCTAATGAAGAGAAGGATCCAGGAGATTATCAAGGAATGTCTTCCTCCTCCAGCGACAGGAAACTAG | 1401 | 0.454 | MDGQLGFSDDNCLVPHLLELFLGLGSLGSLTDESDTKNKTPLKVNAVKAGGMMSLAIDNLGGLWMWGNVPESSPDKGEFSLVSSFTPIPVWDFHGHTVVKVACGNEHVVALVSHGETYKGGDLICYSWGNNGHGQLGLGDTENRLRPEVVKTFNLESLWEVYEVACGAFHTALLTHKKRPSDTLESMCWTFGLGDNGQLGHGTTKGISLPEPVKDLPEHRFLVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLLYGSKFRDPVQVACGAAHTVLVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKELESGTTSGEKKIENKDPEEVTEMEKRLSLATEEMKLLHSKLSTMERYASILHGSIFGKPFEEQDIPISLQNSGFFDIAKEWENMLESADRGKLVMLEKFYRNMLAGVKDKLMKRRIQEIIKECLPPPATGN* | 467 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g0318 | 466 | Coils | Coil | 355 | 375 | - | - | |
| Vvi4g0318 | 466 | Gene3D | - | 123 | 370 | IPR009091 | - | |
| Vvi4g0318 | 466 | Gene3D | - | 1 | 122 | IPR009091 | - | |
| Vvi4g0318 | 466 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 239 | 295 | IPR000408 | - | |
| Vvi4g0318 | 466 | SUPERFAMILY | RCC1/BLIP-II | 22 | 330 | IPR009091 | - | |
| Vvi4g0318 | 466 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 164 | 174 | IPR000408 | - | |
| Vvi4g0318 | 466 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 4 | 355 | - | - | |
| Vvi4g0318 | 466 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 61 | 114 | IPR000408 | - | |
| Vvi4g0318 | 466 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 123 | 177 | IPR000408 | - | |
| Vvi4g0318 | 466 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 186 | 238 | IPR000408 | - | |
| Vvi4g0318 | 466 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 126 | 174 | IPR000408 | - | |
| Vvi4g0318 | 466 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 189 | 234 | IPR000408 | - | |
| Vvi4g0318 | 466 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 239 | 292 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g0318 | Vvi-Chr4 | 2754197 | 2755718 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g0318 | - | - | vvi:100261092 | 937.176 |