Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0317 ATGCTAGAAACCAACGTGGTAAGATGGACTTCGAAGATCACGGATAATGCACGTAGAGGCCTCGTCGACCAAGCGCTATCTTGCTTCTTACAAATGCTGCGTGCAGGTATCGAGCCAAATGCCATAACGTACTCAGCCACAATCAGCGCCTGTGCTCAATCAACACGACCCAGTTTGGCTACAAGCCTGCATTGTTTGATTCTTAAAAAAGGGTTCTCAAATCAGCTCTTTGTTTCAAGTGGGTTGATCTCTATGTACTCGAAGCATGACCGCATAAAAGAAGCTCGTTTCTTGTTCGACGATATGCCTGAAAGAGACGATGTATCCTGGAATTCAATGATTGCAGGGTATTCGCAGCGCGGTTTGAACGAGGAAGCTTGTGGCTTGTTTTGTAGTATGATAAATAGTTGCGAAAATTGGAAATTGCTTGTCAGTGATTTTACTCTGGCTACTGTTCTCAAGGCTTGTGGCGGTTTGGGCTGTTCTAGAATCGGCAAATGCGTGCATGGGTATGCAGTTAAAATTGGTTTTGATTCGGATTTATTTGTTTCTGGGTCGACCGTCTATATGTACTGCAAATGCGGTATTTTAGATATGGCAGGCCTAGCTTTTGATCAAATTGAAAATAAGGATATTGTAGCTTGGAACACTATGATTACTGGGTATGCTCAAAATTGTTATGAAGAAGAGGCTATTGAATTATTCTATCAGATGGAGTTAGAAGGCTTTAAGCCTAATGACACAACATTTTGCTGTGTTTTGAAGGCCTCAACTGCAATGTCGGACAGTGCAGTGGGTAGATGCTTCCATGCTAAAGTCCTGAAGTTGGGATGTTCAATGGATGTTTTTGTGGCTACTGCACTAGTCGATATGTATTCGAAATTTTATGATATAGAAGATGTGGAGAGAGCTTTTGGTGAAATGAGCAAAAGGAATTTGGTGTCCTTTAATGCACTCATCACAGGCTATAGTTTGATGGGTAAGTATGAGGAAGCATTAAGAGTTTATTCCCAGTTGCAATCTGAAGGAATGGAACCTGACTCCTTCACATTCGTAGGCCTTTTCTCCTCTTGCTCTGTATCAAGTACTGTTGCTGAAGGAGCTCAAGTGCATGTCCACTCGGTCAAGTTTGGTTTGGACTCGGATGTCTCGGTTGGGAACTCAATAGTGAACTTCTATTCTAAGTGTGGCTTCACTGACTCTGCATTGGAGGCTTTTGAGTCAATAAATAGACCTAATTCCGTATGCTGGGCTGGAATTATTTCAGGCTTTGCACAAAATGGTGAGGGAGAGAAAGCCCTCATGCAGTTCTGCAAAATGCGCAAGTTTATTGATAAAACAGATGAGTTCTCTTCCTCAAGTGTTATAAAAGCAGTTTCAAGTTGGGCTGCGGTTGAACAGGGAAGGCATTTGCATGCCCATGTGATGAAGTCGGGGCTTGACTGCACAATATATGTAGGAAGTGCAGTGATTGACATGTACTCAAAATGTGGGATGGTAGAAGATGCACAGAAGGTTTTCTCTGTTATGCCTGAAAAGAATGTTGTTTCTTGGAATTCAATGATAACAGGTTATGCCCAAAATGGTTTCTGCAAAGAAGCACTTCTCCTATTTCAGGAAATGACAAGTTCTGGAATTTTGCCCACAGCTGTAACATTTGTTGGGATCCTATTTGCTTGTAGCCATGCGGGTTTAGTGGAAGAAGGGAGAAACTTTTACAATTTAATGGTTCATAATTATGGAATTCCACCCTCAATGGAACATTGCACTTGTATGGTGGACCTCCTTGGCCGAGCAGGTTATCTTGAAGAGGCAGAGGCCTTTCTTCTCAGTTCTTCATTTTCAAAGGAACCCGGAATCTGGGGGTCTCTTCTTTCTGCCTGTGGAGTTCATAAGAATTCTGATGTTGGCTCTCGAGCTGCTCAGCACTGCTTGTTTTTAGAGCCTCATTATTCCTCCTCTTACACTGCTTTATCTAACATATATGCATCTAAAGAATTGTGGTCTGAGGTATCAAGAATAAGAGATCTGATGAAGGATATGGGGGTTGAGAAGGAACCAGGGTGCAGCTGGATTGAGTCATTGAGGTTTGGAGTACAATAA 2103 0.4232 MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIESLRFGVQ* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0317 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Vvi4g0317 700 FunFam Pentatricopeptide repeat-containing protein At4g14850 266 366 - -
Vvi4g0317 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi4g0317 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi4g0317 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 136 IPR002885 -
Vvi4g0317 700 FunFam Putative pentatricopeptide repeat-containing protein 468 541 - -
Vvi4g0317 700 Pfam PPR repeat 415 442 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat 82 105 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat 108 135 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat 589 609 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat family 513 560 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat family 5 52 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat family 312 358 IPR002885 -
Vvi4g0317 700 Pfam PPR repeat family 210 256 IPR002885 -
Vvi4g0317 700 FunFam Pentatricopeptide repeat-containing protein At1g22830 542 699 - -
Vvi4g0317 700 PANTHER OS07G0578800 PROTEIN-RELATED 405 693 IPR045215 GO:0003723|GO:0009451
Vvi4g0317 700 NCBIfam pentatricopeptide repeat 108 135 IPR002885 -
Vvi4g0317 700 NCBIfam pentatricopeptide repeat 314 348 IPR002885 -
Vvi4g0317 700 NCBIfam pentatricopeptide repeat 516 549 IPR002885 -
Vvi4g0317 700 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Vvi4g0317 700 Gene3D Tetratricopeptide repeat domain 7 161 IPR011990 GO:0005515
Vvi4g0317 700 Gene3D Tetratricopeptide repeat domain 531 699 IPR011990 GO:0005515
Vvi4g0317 700 Pfam E motif 631 693 IPR046848 -
Vvi4g0317 700 FunFam Pentatricopeptide repeat-containing protein chloroplastic 164 264 - -
Vvi4g0317 700 Gene3D Tetratricopeptide repeat domain 373 467 IPR011990 GO:0005515
Vvi4g0317 700 Gene3D Tetratricopeptide repeat domain 269 372 IPR011990 GO:0005515
Vvi4g0317 700 Gene3D Tetratricopeptide repeat domain 166 268 IPR011990 GO:0005515
Vvi4g0317 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Vvi4g0317 700 FunFam Pentatricopeptide repeat-containing protein At4g39952, mitochondrial 367 467 - -
Vvi4g0317 700 FunFam Pentatricopeptide repeat-containing protein At3g16610 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0317 Vvi-Chr4 2749901 2752003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0317 20 693 Glycoside Hydrolase AT3G49170 33.869 9.20e-123 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0317 - - vvi:104878995 1410.97