Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0302 ATGAGTCGACCGAGTACGCGCAGCAGCAAGAATAAAAGACATCGGGCGGACGACAATGCTGCAACTACTTGCCAAATATACAGGAAAATTCATTCGACGGGGGAGGTGACCAAGGACGATGCGAATCAGTTGTATATGATTTGGAAGCCTATTTGTCAAGGTTGTCGAGTGAATACAAAAGATAACCCCAACTGTTTTTGTGGTCTCATTCCGCCTCCCAATGGAAGCCGAAAGTCCGGGTTATGGCAGAAAATGTCCGACGTGGTTCTGGCACTCGGTCCTGATCCTTTCAAGGATCTCCGAGCTTCGTCGGAGTATTCCCCCGCGGGCCTCACCAACCTTGGCGCCACTTGCTACGCCAACAGCATTCTCCAATGCCTGTACATGAACAAGACTTTCAGACGAGGTCTTTTCTCTGTTGAACCGGGTCTTTTGAAACAATATCCAGTTCTTGATCAACTTGCCAGGCTTTTTGCACAGCTGCACGCCAGTAAACTGGCTTTTATAGACTCTGCTCCCTTTATTAAAACGCTAGAGTTAGATAATGGCGTTCAACAGGATAGCCATGAGTTTCTTACCTTACTTCTTTCTTTGCTTGAGCGATGTCTCAGCCATTCTCAAGTTTCAAGAGCCAGAACCATTGTTCAGGACCTTTTCCGAGGAAGTGTGTCGCATGTCACCACGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGTTTAAATGATTACCTTAGTGTGGAAGAGCTTCATGGAGATAACCAATATTTTTGTGAGTCATGTGGAACAAGAGTTGACGCCACCCGTAGCATTAAGTTACGCACACTGCCTTATGTCCTTAATTTCCAGCTCAAGCGCTGTGTTTTCCTTCCAAAGACTACAACAAAGAAGAAAATCACTTCTGCATTCTGTTTTCCTGGAGAATTGGATATGAGAGAGAGGCTATCTGAACCTTCTGATTTGGAACTAATATATGACTTGTCAGCTGTGCTGATTCACAAGGGGACTACTGTGAACAGTGGCCATTACATAGCTCATATTAAGGATGAGAATACAGGGCAATGGTGGGAATTTGATGATGAGCATGTCTCAAACCTGGGTCATCACCCATTTGGAGAGGGGTCTTCAAGTTCTGCTGCTAAACCTGTTCAAACTGAGCCATCTGTTCATCTGTCTTCCACTGAACCGATGAATGGTGTCATAAATGGAAATCATATAAATATTGGTCAGCTACAATCTTCAGAATGTAGTATTGTTAGTGGTTCACAGACATACTCATCTGGTGATGCATACATGTTGATGTATAATCTTAGGCGTACCACCAAGAGTGGTGAAGTTAGACAAACTGTATCTGGTGCCAACCATATGGAAATAGAAGGAGATATAATTTATTCAGACAATGATGCTGCTCTTCCAGCTCATCTTTATGAAGAGATAAAAGAACTAAATGCCTCGTATCTTGATGCTTGTCAACAATACAAATCAAAGAAGGAAAGAGAGTTGGATTGTATCACAGAACGGAGGCAGGAAGTGCGATCGGTTCTTTCTGAAGGCCCTGTTCTATCACTTGAGGATCCATATTTTTGGATTTCTACAGACTGGCTTCGCCTGTGGGCTGACAACATCACTCCACCTGTTCTTGACAACACCCCTATCCAGTGCTTGCATGGAAAAGTCCCAGTATCAAAAGTTGGTTCCATGAAGCGCTTGTCATCTAAAGCTTGGAACATGTTGTTCTCTAAGTATGGAGGGGGACCTGCACTGTCAAATGATGACTACTGCATCAATTGCCTTGTGGAAGGGGCTAGCACTATGGTTTCTGCTGATAACTATAGGGATCGGCGAAAAGTAATGAAAGAACTTGCTGATGCAGTACACTCAGGGAAGTGTCTAGATGGAAATTTGTACTATGTTTCAAAATCATGGTTCCAACAGTGGGCACGCAGAAAAATCATTGACTCACCATGCGATGCTGATGCAGGACCAACAGCTTCAATTAGATGCCCTCATGGGAAACTTATGCCTGAGCAAGCTCCTGGTGCTAAGCGTTTGCTGGTTCCTGAAAATCTCTGGCTCTTCTTCTGTGAAAGTGCTAACACAGTCAAACCTGATGATACCTTGGGCTGTTCAGTTTTTCCTTCAGATGTGGAACCATGTGCTACATGCAGTATGGAGCTTACGGAAGTGGCAAGCATAGAAGATACACTAAGAGAATTCAAGCTCAAACAGCGTCAGAATCATGAAAAAATAGCATTGGGAAAAGGTTTTGCACTTTCTTCACATTGCAAGTATTATTTGCTGCCCTCTTCATGGCTGTCAACATGGAGAAGCTACATCAATGCAAATGGAAAGAATGTTTCATCATCAGTGCAACCTGAAATGTTAGATAGTGTCATTGATATGATGAAATGTGGAAAACATTCAAGGCTTCTGGAAAGACCTCTTGAACTGATTTGCAAACGTGGCACGATTTTCCAAAGGTTTTCTGCTACAGATGGGTTAACAATCATAACTAAGGATGATTGGAAATTCTTCTGTGAGGAGTGGGGCTGTACTGAAGAGATGGGCATCTCCGCTGAAATTGAGTTCAGTAACTGTGTGGCAAATAATTTAGCTGGGTCCTGCGAAGAAATGCCAATTATTGAGGAGCATATGAGTCCTCATGATGAAGTGAATGAGGAAATTGAGTCTAGACAACCTGTGATTAAGACTTCTCCTGAGGTATGTGAGGTTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAAAAACTTAACTATTGCAACGAGGATATACGTGTCTGCTTTGTACGTGGTAAGGAAGCTCCTAAATCAATTTTAGAAGCATCTGGGACCATTTCTGAGCCAGATCGCCGAATCTCTAAGCGCTCTCGAAAGACAAATTTTGGAAATTCGATAAATCTGAAAGTTTCTGGGTCCACATCAATCTACCAGTTAAAAATGATGATATGGGAATCCTTTGGGGTAATTAAGGAAAACCAGATACTTCACAAGGGTTCTACAGTAATTGATGGTGAAACTTCCACTCTTGCTGACATGAATATATTTCCTGGAGATCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCCGGGGAACGCTTTTGACATCAAATATCTCGTCCCAGGTTGTCTAA 3285 0.4283 MSRPSTRSSKNKRHRADDNAATTCQIYRKIHSTGEVTKDDANQLYMIWKPICQGCRVNTKDNPNCFCGLIPPPNGSRKSGLWQKMSDVVLALGPDPFKDLRASSEYSPAGLTNLGATCYANSILQCLYMNKTFRRGLFSVEPGLLKQYPVLDQLARLFAQLHASKLAFIDSAPFIKTLELDNGVQQDSHEFLTLLLSLLERCLSHSQVSRARTIVQDLFRGSVSHVTTCSKCGKDSEASSNMEDFYELELNVKGLKSLDESLNDYLSVEELHGDNQYFCESCGTRVDATRSIKLRTLPYVLNFQLKRCVFLPKTTTKKKITSAFCFPGELDMRERLSEPSDLELIYDLSAVLIHKGTTVNSGHYIAHIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSAAKPVQTEPSVHLSSTEPMNGVINGNHINIGQLQSSECSIVSGSQTYSSGDAYMLMYNLRRTTKSGEVRQTVSGANHMEIEGDIIYSDNDAALPAHLYEEIKELNASYLDACQQYKSKKERELDCITERRQEVRSVLSEGPVLSLEDPYFWISTDWLRLWADNITPPVLDNTPIQCLHGKVPVSKVGSMKRLSSKAWNMLFSKYGGGPALSNDDYCINCLVEGASTMVSADNYRDRRKVMKELADAVHSGKCLDGNLYYVSKSWFQQWARRKIIDSPCDADAGPTASIRCPHGKLMPEQAPGAKRLLVPENLWLFFCESANTVKPDDTLGCSVFPSDVEPCATCSMELTEVASIEDTLREFKLKQRQNHEKIALGKGFALSSHCKYYLLPSSWLSTWRSYINANGKNVSSSVQPEMLDSVIDMMKCGKHSRLLERPLELICKRGTIFQRFSATDGLTIITKDDWKFFCEEWGCTEEMGISAEIEFSNCVANNLAGSCEEMPIIEEHMSPHDEVNEEIESRQPVIKTSPEVCEVCIGERESCELMQKLNYCNEDIRVCFVRGKEAPKSILEASGTISEPDRRISKRSRKTNFGNSINLKVSGSTSIYQLKMMIWESFGVIKENQILHKGSTVIDGETSTLADMNIFPGDLLWVKDSEIHEYRDIADELSDHKMEVQQAEEGFRGTLLTSNISSQVV* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0302 1094 ProSiteProfiles DUSP domain profile. 630 733 IPR006615 GO:0004843
Vvi4g0302 1094 SUPERFAMILY Cysteine proteinases 108 456 IPR038765 -
Vvi4g0302 1094 FunFam Ubiquitin carboxyl-terminal hydrolase 26 514 612 - -
Vvi4g0302 1094 FunFam ubiquitin carboxyl-terminal hydrolase 48 95 459 - -
Vvi4g0302 1094 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 110 125 IPR018200 GO:0004843|GO:0006511
Vvi4g0302 1094 ProSiteProfiles DUSP domain profile. 523 615 IPR006615 GO:0004843
Vvi4g0302 1094 SUPERFAMILY DUSP-like 527 612 IPR035927 -
Vvi4g0302 1094 CDD Peptidase_C19L 110 456 IPR033841 GO:0004843
Vvi4g0302 1094 CDD Ubl_USP48 986 1087 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vvi4g0302 1094 ProSiteProfiles DUSP domain profile. 759 887 IPR006615 GO:0004843
Vvi4g0302 1094 MobiDBLite consensus disorder prediction 398 413 - -
Vvi4g0302 1094 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 346 364 IPR018200 GO:0004843|GO:0006511
Vvi4g0302 1094 Coils Coil 1059 1079 - -
Vvi4g0302 1094 MobiDBLite consensus disorder prediction 389 413 - -
Vvi4g0302 1094 FunFam Ubiquitin carboxyl-terminal hydrolase 26 754 879 - -
Vvi4g0302 1094 SMART dusp 541 612 IPR006615 GO:0004843
Vvi4g0302 1094 Gene3D - 754 879 IPR035927 -
Vvi4g0302 1094 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 109 408 IPR028889 -
Vvi4g0302 1094 Pfam Ubiquitin carboxyl-terminal hydrolase 110 456 IPR001394 GO:0004843|GO:0016579
Vvi4g0302 1094 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 68 459 - -
Vvi4g0302 1094 SUPERFAMILY Ubiquitin-like 988 1051 IPR029071 -
Vvi4g0302 1094 Gene3D - 986 1051 - -
Vvi4g0302 1094 Gene3D Cysteine proteinases 97 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0302 Vvi-Chr4 2624577 2635494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0302 105 387 Miscellaneous Gene Families AT4G31670 30.592 3.17e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0302 - K11858 vvi:100259355 2219.12