Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0300 ATGGCAGCACCCAAGTTGAGTTTGTTGGCCTCATTATCACCACCACCCAAATTCCATTTCCACTGGACTCGTATTCTCTGTGGAAGCCCCACCCACTCCTCACTTTTTCTCAGAAATGCTACCACCATCACTAAAATTAACAAGAAGAAGAAGAAGCAGCGCAATGGTAAGGGTGGGATTGTTACTGCCAAGCCAGAATCACTGGCAGAGAAGCTGAAGAAGAGGACCCGTTCCGATAGAGAGTTTGATAAGGAGCAAGCTATGGTCTACGGAGGCACTGCCACCCATGTCCCAGTTATGCTTGGTGAAGTTCTCGAGGTCTTCTCCTCTTTTTCTTCGTCTTCTTCTTCATCCCCGCTGCGTTCCTTCGTCGACTGTACCCTAGGTGCTGCTGGGCATTCTTCCGCTATTATTCAGGCTCATCCTGAATTGGAACTATATGTTGGAATGGATGTTGATCCTATAGCACATGAAAAGGCTCAAGCTCGGATCCGTTCTCTGTGTGGCGATTCTTCTCACTTGAAAGCACATACCTTTATGAGGAATTTCAAAAATATCAAATCCGTGCTTAGAGAGGTTGATGAGGAACTCTTAAGTTCTGGGGTTGATGGGATCTTAATGGACTTGGGAATGTCATCCATGCAGGTGAATAATGCTGAAAGAGGGTTCAGTGTGCTTGCTAATGGACCTCTTGATATGCGAATGGATCCTCAAGCAAGTCTGACAGCAGAAGACATATTGAATTCTTGGCCTGATACTGAAGTCGGGCGAATCCTGAGGGAGTATGGGGAGGAAAGCAACTGGCGCTCTCTTCAGAACAAGATTGTTAAGGCCCGTCTGTTCGGTGGGTTGCATTCTACTGGTGAATTGGTGGATCTTATTCGCAAGACAACACCCAGAACAAGAGGTGGGAGACAAGGGTGGATAAAGACTGCAACCCGGGTGTTTCAAGCTTTGAGGATAGCTGTTAATGATGAACTCAAGACGCTGGAGGATTCCCTCTATGCTTGTTTCGAATGCCTCACCCCTGGGGGCAGACTTGCTGTCATTTCCTTCCACAGTTTGGAGGACAGGATTGTGAAACAGACTTTTCTGGACATCATCAACAGCAATGGGGAAGATGAGAGTGGAGAAGGGGGTGGGCAAGAGGGATGTGGGAAAGATTTGAGAAACATCAGAAATGACAATGATGAAAAAGAAGCATGGATTAAACAGATGGTACAAGGGTGGAATGGAACAATCCTCACAAAAAGACCGATCACACCATCTGAAGAGGAAGAGAGATTGAATCGTCGGAGCCGGAGCGCTAAGCTCAGGGTGATCCAGAAAGGTTGA 1335 0.4697 MAAPKLSLLASLSPPPKFHFHWTRILCGSPTHSSLFLRNATTITKINKKKKKQRNGKGGIVTAKPESLAEKLKKRTRSDREFDKEQAMVYGGTATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVDPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMSSMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQNKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESGEGGGQEGCGKDLRNIRNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAKLRVIQKG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0300 444 Gene3D Putative methyltransferase TM0872, insert domain 219 326 IPR023397 GO:0008168
Vvi4g0300 444 NCBIfam 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH 95 366 IPR002903 GO:0008168
Vvi4g0300 444 FunFam Ribosomal RNA small subunit methyltransferase H 219 326 - -
Vvi4g0300 444 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 92 443 IPR002903 GO:0008168
Vvi4g0300 444 MobiDBLite consensus disorder prediction 414 444 - -
Vvi4g0300 444 MobiDBLite consensus disorder prediction 420 434 - -
Vvi4g0300 444 Pfam MraW methylase family 94 367 IPR002903 GO:0008168
Vvi4g0300 444 Pfam MraW methylase family 411 443 IPR002903 GO:0008168
Vvi4g0300 444 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 96 444 IPR002903 GO:0008168
Vvi4g0300 444 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 443 IPR029063 -
Vvi4g0300 444 SUPERFAMILY Putative methyltransferase TM0872, insert domain 220 323 IPR023397 GO:0008168
Vvi4g0300 444 Gene3D Vaccinia Virus protein VP39 96 441 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0300 K03438 - vvi:100264531 811.986