Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0297 ATGGTGCTTGGGGAAAGATTGGGCGACAAGAGCGATTCTAGATTTTGTGGGGTTGAGACTGAGTTCCAGGAGGACATGCCTCAACTTTTGTCGTTCAATCTATCATCATCTGCGGCCTTTGATTTCGTTGTTGCTCCTGTGATGGATCCGACTTATAGACCAAGCTTGATGGTTAATGATCGTAACAGGTCTGGTGTTCTGCCTGTTGCAGGGTCAGACCTAGTTTTGAGCCCTGCCCAATGGAGTAGTCATGTTGTGGGAAAACTTAGCTCTTGGATTGACTTGGATTCAGAAGATAAGATACTCCGGCTGGATTCTGAAATCACTCTGAAGCAAGAAATAGCGTGGGCTTCTCATCTCTCCCTACAGGCATGCCTTCTTCCTACTCCAAGAGGAGCATCCTGTGCTAATTATGCTAGGTGTGTGAATCAGATTTTACAGGGCTTAAACAATATGCAGTTGTGGCTTAGGATTCCCTTGGAGAAGACTGATGATGATGCTATGGATGGGACACATGATGATTTGAATGGAGGGCAAACGGATTCTTGGGAACTATGGAACTCATTTCGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGAAGCTGCTGACTGCATTTTTTAACCATTCAATTCAGATGGTGCTTTCTGGAAAACCAGTACATAGTCTCCCCAAGGGAAGTTTGGAACTAGGTTCTAATGATGCTGATGGTATTCAGAGACATCCCTTGAGATCATATTTGGACTATGTTGGTTATCTCTATCAGAGGATGGATCCTCTTCCTGAACAAGAACGATTTGAGCTTGGTTATAGGGATTTCTTGCAGTCTCCATTGCAGCCTCTCATGGATAATCTAGAGGCACAAACATATGAGACATTTGAGAAAGATACAATGAAATACATTCAGTACCAAAGAGCAGTCTGTAAAGCTTTGTTAGATAGGGTCCCTGATGAAAAAGCATCCATTGTAACCACAGTACTGATGGTGGTGGGAGCAGGTCGTGGACCTCTGGTTAGAGCGTCATTGCAGGCTGCTGAAGAAACCGGACGTAAGTTGAAAGTTTATGCTGTGGAGAAAAATCCAAATGCAGTTGTTACACTTCATAGTCTGGTTAAACTAGAGGGATGGGAAAACATTGTTACCATAGTTTCTTGTGATATGCGTCAATGGGATGCTCCTGAGAAAGCTGACATTTTGGTTAGTGAGTTGCTGGGTTCTTTTGGTGACAATGAGCTGTCTCCTGAGTGTCTTGATGGAGCTCAAAGATTTTTGAAGCAAGATGGAATTTCAATACCATCATCGTACACAAGTTTCATACAACCAGTGACTACATCAAAACTATACAATGATGTTAAGTTACATAAAGATCTTGTGCACTTTGAAACTGCTTATGTTGTCAAACTGCACAATGTAGCAAGGCTTGCTCCTTGTAAACCGGTTTTTACATTTACTCATCCGAATTACTCAACCGAGAAAAGCAATCAACGTTATAAGAAGCTACAGTTTGAGACACTTAGTGACACTGGATCAGCCATGGTGCACGGATTTGCTGGCTATTTTGATGCAACTCTTTACAAAGATGTACATCTTGGTATTGAACCATCGACGGCAACTCCAAACATGTTCAGCTGGTTTGCAATATTTTTTCCACTGAGAACACCGGTTTGCATACAACCAGGTTCTACTTTAGAAGTTCACTTTTGGCGTTGTTGTGGTGCTACCAAGGTTTGGTATGAATGGTGTGTAACATCTCCTACCCCTTCTCCAATTCACAACTCGAATGGTCGTTCATATTGGGTTGGACTCTAG 1953 0.427 MVLGERLGDKSDSRFCGVETEFQEDMPQLLSFNLSSSAAFDFVVAPVMDPTYRPSLMVNDRNRSGVLPVAGSDLVLSPAQWSSHVVGKLSSWIDLDSEDKILRLDSEITLKQEIAWASHLSLQACLLPTPRGASCANYARCVNQILQGLNNMQLWLRIPLEKTDDDAMDGTHDDLNGGQTDSWELWNSFRLLCEHHSQLFIALDVLSSLPSANSLGRWFGEPVRAAIIHTNSFLTNARGHPCLSKRHQKLLTAFFNHSIQMVLSGKPVHSLPKGSLELGSNDADGIQRHPLRSYLDYVGYLYQRMDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFEKDTMKYIQYQRAVCKALLDRVPDEKASIVTTVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHSLVKLEGWENIVTIVSCDMRQWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTTSKLYNDVKLHKDLVHFETAYVVKLHNVARLAPCKPVFTFTHPNYSTEKSNQRYKKLQFETLSDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIQPGSTLEVHFWRCCGATKVWYEWCVTSPTPSPIHNSNGRSYWVGL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0297 650 Pfam PRMT5 arginine-N-methyltransferase 310 479 IPR035075 -
Vvi4g0297 650 Gene3D - 482 650 - -
Vvi4g0297 650 FunFam Protein arginine N-methyltransferase 5 314 481 - -
Vvi4g0297 650 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 9 650 IPR025799 GO:0016274|GO:0018216
Vvi4g0297 650 Pfam PRMT5 TIM barrel domain 40 304 IPR035247 -
Vvi4g0297 650 Pfam PRMT5 oligomerisation domain 482 648 IPR035248 -
Vvi4g0297 650 FunFam Protein arginine N-methyltransferase 5 482 650 - -
Vvi4g0297 650 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 337 649 IPR029063 -
Vvi4g0297 650 Gene3D - 14 311 - -
Vvi4g0297 650 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 322 628 IPR025799 GO:0016274|GO:0018216
Vvi4g0297 650 PIRSF PRMT5 3 650 IPR007857 GO:0006479|GO:0008168|GO:0035246
Vvi4g0297 650 Gene3D Vaccinia Virus protein VP39 314 481 IPR029063 -
Vvi4g0297 650 FunFam Protein arginine N-methyltransferase 14 311 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0297 K02516 - vvi:100242249 1322.76