Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0286 ATGTCATCCGAATCACAAACCCCCAACCTATCCGTAGAAGACGAAGCCAAGGCCCAGAGCAAGAAAGCCGCCAAGAAAGAGGCCGCCAAACTTGAAAAGCAGCGCCGCCGCCAAGAAGCAGCCTCCTCCGCCGCCTCTGCCTCTGTTGCTGGAATTTCCATAGGTGACACTCCCGACCCCCTCGCTTCCAACTACGGCGATGTCCCTCTCCTTGATTTACAGTCCAAAGAGGTCACCGGTCTCAAATGGACGGACATTGGGGCTTTGACCGAGGATCTCAAGGACCAGAAGGTGTTGATCCGAGGGCGAGCACAGACCATTCGGGCCGTCGGCAAGAATATCGCCTTCTTGGTCGTCAGACAGATGGGTTTCACTGTTCAGTGCGTCTTGACGGTGGCTCCTGATCTAGTCAGTCGCCACATGGTGAAATACGCCACGGGATTGAGCCGCGAGTCCCATGTTGACATTGAAGGGATCATTTCTGTCCCCGGCGTTCCCATCAAGGGCGCTACACAACAGGTGGAAGTTCAAGTGAGGAAACTATATGGCATTAGCAAGGCTGAAAATCTACCAATTAATATTGAGGATGCTGCTCGAAGCGAAAGCGAAATTGAGAAGGCTTTGCAGGCTGGAGAGCAGCTTGTTCGTGTTAATCAGGATACCCGATTAAATTATAGGGTTCTTGACTTGAGAACCCCTGCTAATCAAGCAATTTTCCGCGTCCAGTGTCAAGTTGAAAACATATTTAGGCAGTTCTTGTTATCTGAAGGTTTTGTTGGAATCCATACACCCAAATTGATAGGAGGCTCTAGTGAAGGTGGTTCAGCTGTTTTCAGACTGGACTACAAAGGGCAACCTGCATGTCTGGCACAGTCACCTCAGCTTCACAAGCAAATGGCAATCTGTGGTGATTTTGGGCGTGTTTTCGAGATTGGTCCTGTTTTTAGAGCAGAGGACTCTTTCACTCATAGACATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACACTATTTTGAGGTGATGGATATTGTGGACCGGTTATTCGTTGCAATGTTTGACAGTTTGAATGAGAATTGCAAGAAGGAGCTTGAAGCTATTGAGAGGCAGTATCCATTTGAACCTCTAAAGTACTTGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGGAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAAATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTTGATGTCTTTATTCGAGGTGAGGAGATCATCTCAGGGGCTCAGCGTGTTCATGTACCTGATTTCTTGGAAAAACGTGCAGAGGCTTGTGGCATTGATGTTAAGACTATATCAACATATATTGATTCCTTCCGGTATGGTGCACCTCCACATGGTGGGTTTGGAGTGGGTTTGGAGCGAGTGGTGATGCTCTTCTGTGCTCTTAATAATATTCGCAAAACTTCACTTTTCCCCCGCGATCCAACCAGAATTGCCCCATGA 1635 0.4716 MSSESQTPNLSVEDEAKAQSKKAAKKEAAKLEKQRRRQEAASSAASASVAGISIGDTPDPLASNYGDVPLLDLQSKEVTGLKWTDIGALTEDLKDQKVLIRGRAQTIRAVGKNIAFLVVRQMGFTVQCVLTVAPDLVSRHMVKYATGLSRESHVDIEGIISVPGVPIKGATQQVEVQVRKLYGISKAENLPINIEDAARSESEIEKALQAGEQLVRVNQDTRLNYRVLDLRTPANQAIFRVQCQVENIFRQFLLSEGFVGIHTPKLIGGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKEHYFEVMDIVDRLFVAMFDSLNENCKKELEAIERQYPFEPLKYLRKTLRLPFQEGVQMLKEVGMEVDPYGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPSYDDPLYSNSFDVFIRGEEIISGAQRVHVPDFLEKRAEACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCALNNIRKTSLFPRDPTRIAP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0286 544 Gene3D - 62 190 IPR012340 -
Vvi4g0286 544 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 239 536 IPR006195 -
Vvi4g0286 544 Gene3D Bira Bifunctional Protein; Domain 2 191 544 IPR045864 -
Vvi4g0286 544 PRINTS Aspartyl-tRNA synthetase signature 459 475 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0286 544 PRINTS Aspartyl-tRNA synthetase signature 499 513 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0286 544 PRINTS Aspartyl-tRNA synthetase signature 306 319 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0286 544 PRINTS Aspartyl-tRNA synthetase signature 289 301 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0286 544 SUPERFAMILY Class II aaRS and biotin synthetases 214 543 IPR045864 -
Vvi4g0286 544 Coils Coil 21 41 - -
Vvi4g0286 544 NCBIfam aspartate--tRNA(Asn) ligase 90 544 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g0286 544 FunFam Aspartate--tRNA ligase, cytoplasmic 191 544 - -
Vvi4g0286 544 MobiDBLite consensus disorder prediction 15 39 - -
Vvi4g0286 544 SUPERFAMILY Nucleic acid-binding proteins 63 191 IPR012340 -
Vvi4g0286 544 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 81 544 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g0286 544 CDD AspRS_cyto_N 97 196 - -
Vvi4g0286 544 Pfam tRNA synthetases class II (D, K and N) 219 538 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0286 544 CDD AsxRS_core 216 539 - -
Vvi4g0286 544 MobiDBLite consensus disorder prediction 1 45 - -
Vvi4g0286 544 PANTHER ASPARTYL-TRNA SYNTHETASE 10 544 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Vvi4g0286 544 FunFam Aspartyl-tRNA synthetase, cytoplasmic 61 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0286 Vvi-Chr4 2495445 2500199 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0286 K22503 - vvi:100262746 1046.19