Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0282 ATGGTGCAGATGCTGAGGAGTCGATCGACTACAGATTCCGAAGGGGAACTGAGTGTTGGTGAGGTTCGCGCAAATGGGCTTTGTATGAAAACTACTGAAGTCGAGGCCAAACTCGACGAGGGAAATATTGAAGAGGCTGAATCTTCACTAAGGGAGGGGCTATCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGGAGGTTGGAGTATCAAAGAGGCAATGTGGAAGGCGCTCTTCGTGTTTTTGATGGTATTGATCTTCAAGCTGCTATACAGCGGTTGCAACCTTCTTTTTCTGAAAGGTTACATCCTAGGAAGGGACGCTCTCGCATTGAATCACTTATCACAGTCTCACAGCATGCCGCTGGCCTAGTGCTGGAAGCAATATACTTGAAGGCCAAGTCTCTTCAAAAGCTTGGACGGTTAACTGAGGCTGCTCATGAATGTAAAAGTGTGCTTGATGCTGTGGAGAGGATATTCCATCATGGCATACCCAATGTGCAAGTGGACAGTAAGTTGCAAGAGACAGTAAGCCAAGCTGTAGAGCTGTTTCCAGAACTTTGGAAGCAGGCTGGTTGCTATCATGAAGCGATGTCTGCTTATAGACGTGCACTGCTAAGTCAATGGAATCTTGATAATGACTGCTGTGCAAGGATTCAAAAAGGGTTTGCAGTGTTCTTGCTCTATAGTGGAGTAGAGGCTGCACCACCCAGTTTAGCTGTTCAGATGGATGGTTCATATGTACCAAGAAATAATCTGGAGGAGGCAATCCTACTTTTGATGATTCTTATGAAAAAAATTTACCTTGGTAAGACCAAATGGGATCCATCAGTTATGGAGCACCTTACATTTGCACTCTCTCTGTGCAGCCAAACCTCTGTTTTAGCAAAGCAACTTGAGGAGGTCATGCCTGGGGTATTTCATCGTGTTGACCGCTGGATAACATTGGCTCTTTGTTACAGTGGAGCTGGACAAAATAGTACTTCCCTGAATCTGTTAAGGAAGTCCCTACACAAACATGAAAGACCAGATGACCTCATGGCATTGTTATTGGCTGCCAAGATTTGCAGTGAGGATTCCCTTCTTGCAGCTGAAGGAGTGGGTTATGCTCAGAGAGCAATCAGTAATACTCAGGGAACAGATCACCATTTTAAGGGTGTAGGTCTTCGCATGTTGGGTCTTTGTCTAGCAAAACAGTCAAAAGCTTCTTTATCAGATGCTGAGAGGGCCCGTCTTCAGTCTGAAGCATTGAAGAAATTGAATGAGGCAGTTCCTTTTGAGCGTGACAATTTAGATTTGATTTTTGAGTTGGGAGTTCAATATGCAGAGCACCGGAATTTGAATGTTGCCTTGCGTTATGCGAAGCGGTTCATTGATGCAACAGGTGGGTCCATATCGAAAGGTTGGAGATTACTTGTTATGATTTTGTCTGCTCAACAAAGATTTTCAGAGGCTGAAGCAGTAACTGATGCTGCTTTGAATGTGACTGCAAAATGGGAGCAAGGACCACTACTTAGACTGAAAGCAAAATTGAAGATCTCTGAGTCATTACCCATGGATGCTATTGAAACTTTTTGTTCCCTCCTTGCATTGGCTCAAGCCCAAAGGAAATCGCTTGGTCCTCGCCCAAGTGTTCATCAGGTTGATGACGATAGAGTCAATGAATTTGAAGTCTGGTATGGCGTCGCGACTTTATACTCAAGCCTTTCACATTGGAGGGATGCAGAGATATGCTTGGGAAAAGCTAGAGAGTTGAAAGAATACTCAGTGGAATTACTGCATGCAGAAGGTGTTAAGTTTGAAGGTCATGGACAAATCCAAGAAGCTTTGGCTGCTTATATCAATGCCCTTTTACTAGATCCAGGTTATGTGCCTTGCAAGATCTTGATTGGTGCTCTATTGTTGAAGATGGGCTCGAAGGCATTTCCTGTTGTGAGAAGCCTACTTTCAGATGCATTGAGGATAGAACCTACCAACCGAATGGCTTGGTATTACCTGGGAATGGCTCACAGAGACGATGGACGAATAGCTGATGCTACAGACTGCTTCCAAGCAGCCTCCATTCTTGAAGAATCCGATCCCATTGAAAGCTTCAGCTCCATTCTTTGA 2109 0.4443 MVQMLRSRSTTDSEGELSVGEVRANGLCMKTTEVEAKLDEGNIEEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSERLHPRKGRSRIESLITVSQHAAGLVLEAIYLKAKSLQKLGRLTEAAHECKSVLDAVERIFHHGIPNVQVDSKLQETVSQAVELFPELWKQAGCYHEAMSAYRRALLSQWNLDNDCCARIQKGFAVFLLYSGVEAAPPSLAVQMDGSYVPRNNLEEAILLLMILMKKIYLGKTKWDPSVMEHLTFALSLCSQTSVLAKQLEEVMPGVFHRVDRWITLALCYSGAGQNSTSLNLLRKSLHKHERPDDLMALLLAAKICSEDSLLAAEGVGYAQRAISNTQGTDHHFKGVGLRMLGLCLAKQSKASLSDAERARLQSEALKKLNEAVPFERDNLDLIFELGVQYAEHRNLNVALRYAKRFIDATGGSISKGWRLLVMILSAQQRFSEAEAVTDAALNVTAKWEQGPLLRLKAKLKISESLPMDAIETFCSLLALAQAQRKSLGPRPSVHQVDDDRVNEFEVWYGVATLYSSLSHWRDAEICLGKARELKEYSVELLHAEGVKFEGHGQIQEALAAYINALLLDPGYVPCKILIGALLLKMGSKAFPVVRSLLSDALRIEPTNRMAWYYLGMAHRDDGRIADATDCFQAASILEESDPIESFSSIL* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0282 702 PANTHER PROTEIN NPG1 10 699 IPR043376 -
Vvi4g0282 702 SUPERFAMILY TPR-like 482 690 IPR011990 GO:0005515
Vvi4g0282 702 SMART tpr_5 126 159 IPR019734 GO:0005515
Vvi4g0282 702 SMART tpr_5 660 693 IPR019734 GO:0005515
Vvi4g0282 702 SMART tpr_5 310 343 IPR019734 GO:0005515
Vvi4g0282 702 SMART tpr_5 556 589 IPR019734 GO:0005515
Vvi4g0282 702 SMART tpr_5 590 623 IPR019734 GO:0005515
Vvi4g0282 702 Gene3D Tetratricopeptide repeat domain 552 696 IPR011990 GO:0005515
Vvi4g0282 702 FunFam NPG1 547 696 - -
Vvi4g0282 702 Gene3D Tetratricopeptide repeat domain 238 539 IPR011990 GO:0005515
Vvi4g0282 702 Gene3D Tetratricopeptide repeat domain 30 209 IPR011990 GO:0005515
Vvi4g0282 702 SUPERFAMILY TPR-like 126 451 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0282 Vvi-Chr4 2476624 2483802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0282 19 702 Calmodulin-binding Proteins AT2G43040 74.273 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0282 K21843 - vvi:100267895 1353.58