Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0280 ATGGCGAGCATTCAACTACAGAGGAGCTACTTCTTGTCGACTACTACTGCTGCTTCTTCTTCGCCTTCACTTTCATTCCTTCCCTTCATGGCCAAGTTGCAATACAGGGGATTTCAGAATTATCCTGCTACTTCCTTACCATGCACGAGGCTTAATGGGGGAGATAAATTCGGGAACTTCTCTCAGATTAATTTTAGAAAAATCGGCATACCTGCATTGGTCAATAACATTCAACCAAAGATTCTTAGATTAAATGTTAATCGGAATTTTCATATTTTTGGAAGCCTTACTGATAGTTCCAGGTTTGCGGTGCCTGTTCAGTCCCAGTTACGACTTGGGTTTCCTAATGCTGTGACACCCATTTATGGGACTTTGGACATTGGTATCAGATTTAGTTCACCTTATTACAAAGCTCTTGCTAAGAGGCCCTTCTCCCAGGTCCCAAGAGTAAAAAATAAAGGTGATAACTTGGGTATAAGGGATGGGACTGCTGAGAATACTTCACTTTTCAAACCTTTTAATAAGCATAGGAAGTGGGAGAAGTCATTGACTGCTCACAGGAGAAGTTTTAATGGTGCGGTGCGTGCTGCAGGTTCAAACCAGCCCACAAAAGTTAGTTCGTCTAGTTCTAGAAGATCAGCTCTTGGTGATGGTGACATGATGACTCAACAAGAGCAACTTGTTGATAATGGCAGGAAGGATGCGGATTTAAGTCCATCTATTTCAACTTCACCTGTTAGCAACAATAACCGAGGCTCTAAAGCTACAGAAAAACAGAGGAAGCAGTCAAGAACTAAGAAAAATAAGGAACAAGTTACTAGCACTGATGCAAGCTCTGATGTCGCTCAGAAGAAAAGTACTAAAAGCAGCTCTGAAGCAAATAAGTCCAATATCACTAAAAAGAGCCAGTCCCCACAGGCTTCAAAGAATAATTCAACTGGGAACAAGCCTGTGGAGGCGCTTGATAGTTCTGTTTCAACGAAGAGCCAATCCAAGAAGGCAACTGGCAGCTCTAATAAAAAGGGAAAATCTCCAAAAGTGGCTAATGAGTCACCAAAGAAACAGACGGTCCACACTATGGGCAAAATTAAGTCCCTGGAACAAAGGCCACTGAAGAAATTATATCCTTCTTCTGGGAAATCTGTTGTGGTGGTGGAGTCTGTTACAAAGGCTAAGGTCATTCAGGGCTACCTTGGTGACATGTACGAAGTCCTACCTAGCTATGGGCATGTTAGGGACTTGGCTGGAAGGTCAGGATCTGTGCGGCCTGATGATGACTTCAGCATGGTTTGGGAGGTCCCATCTGCTGCCTGGACTCATCTTAAGAGTATTAAGGTTGCCCTAGGCGGAGCAGAAAATCTTATTCTTGCATCAGATCCTGATCGTGAAGGAGAGGCTATTGCTTGGCACATTATTGAGATGTTGCTGCAGCAGGATGCTTTACATAAAGATTTAACTGTAGCAAGGGTTGTTTTTCATGAAATAACTGAGTCATCCATCAAAAGTGCTCTGGATGCTCCAAGAGAGATTGATGTAAACTTGGTTCATGCTTACCTCGCACGACGTGCTCTTGATTATTTGATCGGATTCAACATTTCCCCACTATTATGGAGGAAGTTACCAGGTTGCCAGTCAGCTGGGCGAGTCCAATCAGCTGCTCTGGCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCACAGGAATATTGGACGGTTGAAGTTGAATTTAATAGGAAACAGGGTTCCTCAATGAACTCCAAATTTTTTCCATCATACTTGACTCATTTCGACTCCAAAAAGTTAAATCAATTTTCAATCAGCTCTCATACAGAGGCAAAGGCTATTGAACAGGAGATTAATTCATTGGAGTTCAAAGTGATTGGTTCTAAAAGAAATAAAATGCGGAAAAATCCTCCCACACCATATATAACATCCACACTTCAGCAAGATGCTGCAAACAAATTACATTTTTCAGCAATGTATACAATGAAGTTAGCACAGAGACTTTATGAGGGGGTTCAATTATCAGATGGGAAGGCAGCAGGATTAATAACATACATGAGAACAGATGGACTACATGTTTCTGATGAAGCTGCGAAGGACATACGCTCCTTGGTTGCAGAAAGGTATGGGTCCAATCTTGCATCAGATGGTGTTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCAACTGATATTCAGCGGTTACCATCAATGCTTGCTGGAGTACTTGATGAAGATTCCTTAAAGTTGTACACTCTTATCTGGTCTCGCACAATGGCATGCCAAATGGAACCAGCTACAATTGATCAGATCCAAGTCGATATAGGGAATGCCAATGAGTCTGTTGTGTTTCGATCCACATGCTCAGGAGTTGAGTTTTTTGGATACCAGGCAGTCTATAAGGATGTGGAAGCTAAAGCAATCAGAGTTGATGAAAATGAAGGGAATGAACGTGGTGAAGTCTTTAAGGCTCTCAGTTCATTGAAGGCAGGGGATCCATTGTATCTTAGTTTACTGGAGCTAGAGCAGCATCATACCCTTCCTCCATCACGGTACTCAGAGGGTGCCCTGGTTAAGAAGCTGGAGGAGCTTGGGATTGGAAGGCCTTCTACATATGCAATCACAATGAAAGTTTTACAGGATAGAAACTATGTGACAGTCAAAAACCGAGTATTATATCCGGAATTTCGTGGTCGCATGGTGTCGGCATTTCTCTCTCACCATTTTTCAGAGGTCACAGACTATAGTTTCACTGCTGATATGGAAACTGAGCTTGACAATGTTTCTGCTGGCTTGACTGAGTGGAAAGGTCTCCTCAAAGATTATTGGACACGATTCAGCATGTATTGTAATCGTGTTAGTAATGTCCACATTCATCAGGTGGAGAAGATGTTGGAGAAAAAATTTGGGGATTTTTTGTTTTCCTTTCTTCCCGATAAAAGTAGGACATGCCCAAGTTGTATGGAGGGCACATTGATTTTCAAAGTAAGTCGATTTGGTTCAGGCTATTTTATAGGTTGTGATCAACACCCAAAGTGCAAGTACATTGCTAAGATGTTAGATGGTGATGATGATGAAGAGGTTGCTTCTCAAGACAAAACATTTGAGGAGCCAAAGGCTCTGGGTCTTAGTCCTGGTTCAAGTGAGAAGATTCTTTTGAAGAATGGTCCATATGGATTCTATCTTCAGCTTGGTGAAGACAGGAAAGGATACTTGCCTAAAAGAGCCTCTGTTTCCCATATAAAGGATGTGGGCTCTATAACACTTGAAGATGCTCTTGAGTTGCTACGCTATCCTGTGACATTGGGAAACCATCCAAATGATGATCACCCTGTAGTCCTAAAGCTGGCAAAAAATGGATTTTCCATTAGACATCGGCGAACAATTGCTCCTGTGCCTAAGAACATAAAACCAAATGACATCACTCTAGAGAAAGCATTGAAGCTACTGTTGGGTAAAGATGTAAAGCAGTCTGGCCGGCCCAAGAACAAAAAGAAACAAGAAGTGTATGAAGCCATGTAG 3558 0.4196 MASIQLQRSYFLSTTTAASSSPSLSFLPFMAKLQYRGFQNYPATSLPCTRLNGGDKFGNFSQINFRKIGIPALVNNIQPKILRLNVNRNFHIFGSLTDSSRFAVPVQSQLRLGFPNAVTPIYGTLDIGIRFSSPYYKALAKRPFSQVPRVKNKGDNLGIRDGTAENTSLFKPFNKHRKWEKSLTAHRRSFNGAVRAAGSNQPTKVSSSSSRRSALGDGDMMTQQEQLVDNGRKDADLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQVTSTDASSDVAQKKSTKSSSEANKSNITKKSQSPQASKNNSTGNKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAERYGSNLASDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSMLAGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAVYKDVEAKAIRVDENEGNERGEVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVKKLEELGIGRPSTYAITMKVLQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKTFEEPKALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRYPVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQSGRPKNKKKQEVYEAM* 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 254 273 - -
Vvi4g0280 1185 SUPERFAMILY Prokaryotic type I DNA topoisomerase 380 1003 IPR023405 -
Vvi4g0280 1185 Pfam DNA topoisomerase 510 951 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 SMART topIaneu2 633 914 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 Pfam Topoisomerase C-terminal repeat 1057 1114 IPR025589 -
Vvi4g0280 1185 Pfam Toprim domain 382 495 IPR006171 -
Vvi4g0280 1185 Gene3D Topoisomerase I, domain 3 566 861 IPR013825 -
Vvi4g0280 1185 SMART toprim5 380 480 IPR006171 -
Vvi4g0280 1185 Gene3D Bacterial Topoisomerase I, domain 1 989 1035 - -
Vvi4g0280 1185 CDD TOP1Ac 513 959 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 670 693 IPR023406 GO:0003917
Vvi4g0280 1185 NCBIfam type I DNA topoisomerase 383 1030 IPR005733 GO:0003677|GO:0003917|GO:0006265
Vvi4g0280 1185 PRINTS Prokaryotic DNA topoisomerase I signature 684 693 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 PRINTS Prokaryotic DNA topoisomerase I signature 877 891 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 PRINTS Prokaryotic DNA topoisomerase I signature 762 778 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 PRINTS Prokaryotic DNA topoisomerase I signature 544 562 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 PRINTS Prokaryotic DNA topoisomerase I signature 454 467 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 191 365 - -
Vvi4g0280 1185 CDD TOPRIM_TopoIA_TopoI 380 507 IPR034149 -
Vvi4g0280 1185 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 374 1180 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g0280 1185 Gene3D Topoisomerase I, domain 2 520 955 IPR013824 -
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 236 253 - -
Vvi4g0280 1185 Pfam Topoisomerase DNA binding C4 zinc finger 994 1030 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Vvi4g0280 1185 Gene3D Topoisomerase I, domain 4 641 777 IPR013826 -
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 274 362 - -
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 194 228 - -
Vvi4g0280 1185 Gene3D - 377 516 - -
Vvi4g0280 1185 SMART topIban2 486 574 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vvi4g0280 1185 ProSiteProfiles Toprim domain profile. 380 495 IPR006171 -
Vvi4g0280 1185 MobiDBLite consensus disorder prediction 1166 1185 - -
Vvi4g0280 1185 Hamap DNA topoisomerase 1 [topA]. 380 1138 IPR028612 GO:0003677|GO:0003916|GO:0006265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0280 - - vvi:100247441 2316.19