Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0276 ATGGCAGGGCCTGATCTTGGAGTGGAAAGTGTAGACAGCAACGACATCATAACAGTATTAGCATCAGAAGGGATTGAGTTCCTTTTATCTGGTGAAGGAAAGGTCTCTTTATCATCAACTGAAGGGAAGATGATTTGCCTCTTCTTCTCAGCCAACTGGTGCAGGCCTTGTAGAACTTTTACACCACAGCTGGTCCAAATCTATAATTCATTAATAAAGACTGGTAGAATGATAGAGATTATATTCATATCCTTTGACCGAGATGAGACTGGATTTGGGGAGCACTTTAAGTCCATGCCATGGCTTGCAGTTCCGTTCAATGTAGATTTGCATAGGCGATTGAGTGACCACTACCATGTTGATCACATCCCATCATTTATACCATTGGGCTTGGATGGAAAATCAATTGAAGAAGATGCAATTGGGTTGATTGAAGACTATGGTGCAAGTGCATTTCCCTTCACAAGCCAGAGAAGGGAGGAATTGAAGGCTATGGATAATGCTAAGCGTCAGGGAGGAAAACTAGAAGAACTTTTGGCAAATGAAGGACGAAACCATGTGATTTCTAGCAGTGGTAGAGAGATATTAGTATCTGAACTTGTTGGGAAGACAATAGGCCTCTACTTTGCTGCGCATTGGTGCCCTCCTTGCCGCGCCTTCACTGCACAACTTATAGAAGCTTACAACAAGCTGGTGGCCACTCGAAATCAGTGCTTTGAAATAATATTTGTCTCAACAGATCGAGACCACCAAGAATTTGATCTCAGCTTAAGTAACATGCCATGGCTAGCCATCCCATACGAGGACAAGGCGCGACAAGACCTTTGCAGGATCTTTGACATCAAAGGGATTCCAGCTTTGGTCCTACTAGGCTCTGATGGGAAGACAATTAGCACAAATGGGAGGGCCATTATTTCCTCCTATGGTGCCATGGCCTTTCCATTTACCGAGTCAAGGACTACTGAGATTGAAGCAGCCTTGAAAGAGGAAGGAGACGCGCTGCCTCGCCAGGTAAAGGACCTGAAACATGAACATATACTTAAGCTGGACATGGCCAAAGCATATGTATGTGACTCCTGCAAGAAGCTAGGGAGGTTCTGGGCATTCTCTTGTGATGTATGTGACTATGATCTTCATCCAACATGTGTAGAAGAAAAACAAGAAACTTATTTGGAAGATCCAGTCATGGGGCTTGTATGA 1200 0.44 MAGPDLGVESVDSNDIITVLASEGIEFLLSGEGKVSLSSTEGKMICLFFSANWCRPCRTFTPQLVQIYNSLIKTGRMIEIIFISFDRDETGFGEHFKSMPWLAVPFNVDLHRRLSDHYHVDHIPSFIPLGLDGKSIEEDAIGLIEDYGASAFPFTSQRREELKAMDNAKRQGGKLEELLANEGRNHVISSSGREILVSELVGKTIGLYFAAHWCPPCRAFTAQLIEAYNKLVATRNQCFEIIFVSTDRDHQEFDLSLSNMPWLAIPYEDKARQDLCRIFDIKGIPALVLLGSDGKTISTNGRAIISSYGAMAFPFTESRTTEIEAALKEEGDALPRQVKDLKHEHILKLDMAKAYVCDSCKKLGRFWAFSCDVCDYDLHPTCVEEKQETYLEDPVMGLV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0276 399 Gene3D Glutaredoxin 178 317 - -
Vvi4g0276 399 ProSiteProfiles Thioredoxin domain profile. 1 170 IPR013766 -
Vvi4g0276 399 SUPERFAMILY Thioredoxin-like 187 298 IPR036249 -
Vvi4g0276 399 PANTHER THIOREDOXIN 8 348 - -
Vvi4g0276 399 Pfam Thioredoxin-like 202 295 IPR012336 -
Vvi4g0276 399 Pfam Thioredoxin-like 42 133 IPR012336 -
Vvi4g0276 399 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Vvi4g0276 399 SUPERFAMILY Cysteine-rich domain 334 384 IPR046349 -
Vvi4g0276 399 CDD TryX_like_TryX_NRX 185 315 IPR045870 GO:0004791
Vvi4g0276 399 Gene3D Glutaredoxin 21 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0276 Vvi-Chr4 2397246 2398809 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0276 K17609 - vvi:100257684 813.527