Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0271 ATGGACCTGAATGCACCGCACACCATGGGAACGACTATCATTGGAGTCACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCGGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAACACACGATACAGCTTGGGCAGCCTGCGACTGTCAAAGTTGCTGCAAACCTTGTCAGGCTTGTATCATATAATAACAAGAACATGCTAGAGACTGGCTTAATAGTTGGTGGATGGGATAAGTATGAAGGTGGTAAAATATATGCAATCCCTCTTGGAGGAACAATTATAGAGCAGCCTTTTGCTATTGGAGGTTCTGGCTCCACTTACTTGTATGGATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGCGGTGGTGTCATCCGCACTGTCATTATAAACTCTGAAGGAGTGACAAGAAACTTCTACCCAGGTGATTCTCTTCCACTGTGGCACGAGGAGTTGCCACCTCAGAATTCATTGCTGGAACTACTGCACTCTTCTAGTCCTGAGCCAATGAACGTGTAA 696 0.4612 MDLNAPHTMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLVSYNNKNMLETGLIVGGWDKYEGGKIYAIPLGGTIIEQPFAIGGSGSTYLYGFFDQAWKEGMTKDEAEQLVVKAVSLAIARDGASGGVIRTVIINSEGVTRNFYPGDSLPLWHEELPPQNSLLELLHSSSPEPMNV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0271 231 ProSiteProfiles Proteasome beta-type subunit profile. 10 189 IPR023333 -
Vvi4g0271 231 Pfam Proteasome subunit 9 189 IPR001353 GO:0005839|GO:0051603
Vvi4g0271 231 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 11 214 IPR029055 -
Vvi4g0271 231 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 6 210 IPR029055 -
Vvi4g0271 231 PANTHER METALLOPROTEASE TLDD 4 205 IPR023333 -
Vvi4g0271 231 CDD proteasome_beta_type_6 11 198 - -
Vvi4g0271 231 ProSitePatterns Proteasome beta-type subunits signature. 14 61 IPR016050 GO:0005839|GO:0051603
Vvi4g0271 231 PRINTS Proteasome component signature 139 150 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi4g0271 231 PRINTS Proteasome component signature 175 186 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi4g0271 231 PRINTS Proteasome component signature 18 33 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi4g0271 231 PRINTS Proteasome component signature 150 161 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi4g0271 231 FunFam Proteasome subunit beta 11 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0271 Vvi-Chr4 2365712 2368814 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0271 K02738 - vvi:100266463 461.84